Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02621-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:9621829-9625659 - Strand: +


Fig. S5 for SmLINC02621-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_151120.1 0 2.34 3.50 10.04 9.86
SmLINC02621-IBu 0 3.17 0.00 10.12 9.87
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_123200.1 0 0.00 0.00 12.38 11.42

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_058660.1 SmLINC02621-IBu 0.94 7.01e-08 8.49e-06
Smp_123200.1 SmLINC02621-IBu 0.92 7.51e-07 4.36e-05
Smp_137320.1 SmLINC02621-IBu 0.94 1.64e-07 1.52e-05
Smp_141680.1 SmLINC02621-IBu 0.91 1.88e-06 8.35e-05
Smp_151120.1 SmLINC02621-IBu 0.91 1.28e-06 6.38e-05
Smp_170280.1 SmLINC02621-IBu 0.91 1.25e-06 6.26e-05