Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02609-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:9016046-9026608 - Strand: +


Fig. S5 for SmLINC02609-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_123000.1 0 0.49 -5.87 -12.08 -12.08
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
SmLINC02609-IBu 0 0.63 -2.31 -10.45 -10.45
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC02609-IBu 0.92 9.63e-07 5.19e-05
Smp_036270.4 SmLINC02609-IBu 0.90 3.22e-06 1.00e-04
Smp_111640.1 SmLINC02609-IBu 0.91 2.17e-06 9.22e-05
Smp_112090.1 SmLINC02609-IBu 0.91 1.34e-06 6.56e-05
Smp_123000.1 SmLINC02609-IBu 0.92 7.50e-07 4.36e-05
Smp_125070.1 SmLINC02609-IBu 0.91 1.50e-06 7.12e-05
Smp_182090.1 SmLINC02609-IBu 0.94 1.88e-07 1.67e-05
Smp_184710.1 SmLINC02609-IBu 0.90 3.40e-06 1.00e-04
Smp_185680.1 SmLINC02609-IBu 0.92 6.83e-07 4.08e-05
Smp_185830.1 SmLINC02609-IBu 0.94 1.69e-07 1.55e-05
Smp_204360.1 SmLINC02609-IBu 0.94 7.04e-08 8.52e-06
Smp_205330.1 SmLINC02609-IBu 0.90 3.36e-06 1.00e-04
Smp_205450.1 SmLINC02609-IBu 0.91 1.71e-06 7.81e-05