Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02587-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:7642198-7643434 - Strand: -


Fig. S5 for SmLINC02587-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC02587-IBu 0 0.00 0.00 7.99 8.12
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_038870.2 SmLINC02587-IBu 0.91 2.42e-06 9.96e-05
Smp_058660.1 SmLINC02587-IBu 0.93 3.74e-07 2.69e-05
Smp_079420.1 SmLINC02587-IBu 0.90 3.01e-06 1.00e-04
Smp_081920.1 SmLINC02587-IBu 0.90 3.41e-06 1.00e-04
Smp_123550.1 SmLINC02587-IBu 0.95 2.97e-08 4.74e-06
Smp_137320.1 SmLINC02587-IBu 0.94 6.68e-08 8.22e-06
Smp_141680.1 SmLINC02587-IBu 0.92 1.08e-06 5.64e-05
Smp_145400.1 SmLINC02587-IBu 0.91 2.16e-06 9.19e-05
Smp_151120.1 SmLINC02587-IBu 0.94 1.27e-07 1.27e-05
Smp_156930.1 SmLINC02587-IBu 0.93 2.28e-07 1.90e-05
Smp_159070.2 SmLINC02587-IBu 0.90 3.46e-06 1.00e-04
Smp_166860.1 SmLINC02587-IBu 0.91 1.65e-06 7.61e-05
Smp_172480.1 SmLINC02587-IBu 0.91 1.43e-06 6.88e-05
Smp_172960.1 SmLINC02587-IBu 0.93 2.70e-07 2.14e-05
Smp_194860.1 SmLINC02587-IBu 0.94 6.83e-08 8.34e-06
Smp_203090.1 SmLINC02587-IBu 0.91 2.16e-06 9.18e-05
Smp_205270.1 SmLINC02587-IBu 0.92 5.93e-07 3.70e-05