Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02579-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:7300770-7304036 - Strand: +


Fig. S5 for SmLINC02579-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02579-IBu 0 3.65 3.89 6.08 5.94
Smp_130790.1 0 8.99 8.69 10.99 11.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_083990.2 0 9.99 8.37 12.41 12.60

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC02579-IBu 0.94 9.56e-08 1.04e-05
Smp_055340.2 SmLINC02579-IBu 0.91 1.43e-06 6.88e-05
Smp_083990.2 SmLINC02579-IBu 0.96 2.87e-09 1.00e-06
Smp_130790.1 SmLINC02579-IBu 0.90 3.78e-06 1.00e-04