Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02551-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:6516990-6518576 - Strand: -


Fig. S5 for SmLINC02551-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02551-IBu 0 -0.21 1.64 4.04 5.37
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_130100.1 0 -1.34 3.61 11.71 14.01

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 SmLINC02551-IBu 0.95 2.53e-08 4.25e-06
Smp_016490.2 SmLINC02551-IBu 0.90 2.54e-06 1.00e-04
Smp_024180.1 SmLINC02551-IBu 0.91 1.73e-06 7.85e-05
Smp_024180.2 SmLINC02551-IBu 0.92 9.76e-07 5.24e-05
Smp_028870.1 SmLINC02551-IBu 0.90 3.50e-06 1.00e-04
Smp_033260.1 SmLINC02551-IBu 0.93 2.57e-07 2.07e-05
Smp_050350.3 SmLINC02551-IBu 0.96 9.67e-09 2.23e-06
Smp_052280.2 SmLINC02551-IBu 0.92 5.54e-07 3.53e-05
Smp_056460.1 SmLINC02551-IBu 0.90 3.14e-06 1.00e-04
Smp_086450.3 SmLINC02551-IBu 0.92 7.64e-07 4.41e-05
Smp_094050.1 SmLINC02551-IBu 0.95 2.23e-08 3.91e-06
Smp_102780.1 SmLINC02551-IBu 0.90 4.11e-06 1.00e-04
Smp_130100.1 SmLINC02551-IBu 0.91 1.87e-06 8.31e-05
Smp_140720.1 SmLINC02551-IBu 0.94 1.21e-07 1.23e-05
Smp_155570.1 SmLINC02551-IBu 0.91 1.77e-06 7.98e-05
Smp_159650.1 SmLINC02551-IBu 0.91 2.29e-06 9.59e-05
Smp_169670.1 SmLINC02551-IBu 0.91 2.30e-06 9.62e-05
Smp_192780.1 SmLINC02551-IBu 0.93 2.47e-07 2.01e-05
Smp_201910.1 SmLINC02551-IBu 0.92 7.05e-07 4.17e-05
Smp_202610.1 SmLINC02551-IBu 0.90 3.34e-06 1.00e-04
Smp_203030.1 SmLINC02551-IBu 0.93 4.46e-07 3.03e-05