Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02550-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:6384798-6387384 - Strand: +


Fig. S5 for SmLINC02550-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02550-IBu 0 0.28 -1.05 3.00 -2.62
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC02550-IBu 0.92 6.67e-07 4.01e-05
Smp_128510.1 SmLINC02550-IBu 0.92 1.19e-06 6.04e-05
Smp_160360.1 SmLINC02550-IBu 0.91 1.43e-06 6.88e-05