Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02547-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:6327127-6329721 - Strand: +


Fig. S5 for SmLINC02547-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC02547-IBu 0 0.00 0.00 8.13 8.56
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC02547-IBu 0.90 2.89e-06 1.00e-04
Smp_031040.1 SmLINC02547-IBu 0.90 4.70e-06 1.00e-04
Smp_031770.10 SmLINC02547-IBu 0.92 1.03e-06 5.48e-05
Smp_033260.1 SmLINC02547-IBu 0.91 1.97e-06 8.60e-05
Smp_034980.2 SmLINC02547-IBu 0.94 1.53e-07 1.45e-05
Smp_038870.2 SmLINC02547-IBu 0.91 2.27e-06 9.51e-05
Smp_040970.2 SmLINC02547-IBu 0.92 9.24e-07 5.04e-05
Smp_050350.3 SmLINC02547-IBu 0.90 4.27e-06 1.00e-04
Smp_052280.2 SmLINC02547-IBu 0.90 4.13e-06 1.00e-04
Smp_056360.3 SmLINC02547-IBu 0.91 1.72e-06 7.82e-05
Smp_056460.1 SmLINC02547-IBu 0.91 2.09e-06 8.98e-05
Smp_058660.1 SmLINC02547-IBu 0.93 3.43e-07 2.53e-05
Smp_079420.1 SmLINC02547-IBu 0.92 7.69e-07 4.44e-05
Smp_094050.1 SmLINC02547-IBu 0.90 4.09e-06 1.00e-04
Smp_095410.1 SmLINC02547-IBu 0.95 1.57e-08 3.09e-06
Smp_137000.2 SmLINC02547-IBu 0.92 7.10e-07 4.19e-05
Smp_137320.1 SmLINC02547-IBu 0.90 3.27e-06 1.00e-04
Smp_145400.1 SmLINC02547-IBu 0.93 5.04e-07 3.30e-05
Smp_159070.2 SmLINC02547-IBu 0.90 2.81e-06 1.00e-04
Smp_172480.1 SmLINC02547-IBu 0.92 9.13e-07 5.00e-05
Smp_172960.1 SmLINC02547-IBu 0.92 7.03e-07 4.16e-05
Smp_192780.1 SmLINC02547-IBu 0.93 2.44e-07 2.00e-05
Smp_194860.1 SmLINC02547-IBu 0.91 1.44e-06 6.91e-05
Smp_205270.1 SmLINC02547-IBu 0.90 2.81e-06 1.00e-04