Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02535-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:6327130-6338880 - Strand: +


Fig. S5 for SmLINC02535-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02535-IBu 0 0.00 2.95 8.24 10.10
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_139160.1 0 1.79 5.17 7.78 10.90
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_020080.2 0 6.03 4.29 10.17 11.72
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC02535-IBu 0.96 9.63e-09 2.22e-06
Smp_016490.2 SmLINC02535-IBu 0.92 6.65e-07 4.00e-05
Smp_020080.2 SmLINC02535-IBu 0.91 1.76e-06 7.96e-05
Smp_028870.1 SmLINC02535-IBu 0.93 3.03e-07 2.32e-05
Smp_037720.1 SmLINC02535-IBu 0.94 1.44e-07 1.39e-05
Smp_083430.1 SmLINC02535-IBu 0.96 8.51e-09 2.05e-06
Smp_085180.1 SmLINC02535-IBu 0.93 2.86e-07 2.23e-05
Smp_086450.3 SmLINC02535-IBu 0.93 3.65e-07 2.64e-05
Smp_102780.1 SmLINC02535-IBu 0.93 1.98e-07 1.73e-05
Smp_105450.2 SmLINC02535-IBu 0.90 4.29e-06 1.00e-04
Smp_123880.1 SmLINC02535-IBu 0.96 1.43e-08 2.90e-06
Smp_130100.1 SmLINC02535-IBu 0.90 2.94e-06 1.00e-04
Smp_131410.1 SmLINC02535-IBu 0.95 2.96e-08 4.73e-06
Smp_131490.1 SmLINC02535-IBu 0.92 5.46e-07 3.49e-05
Smp_136730.1 SmLINC02535-IBu 0.92 5.21e-07 3.38e-05
Smp_137720.1 SmLINC02535-IBu 0.93 2.80e-07 2.20e-05
Smp_137810.1 SmLINC02535-IBu 0.92 5.58e-07 3.54e-05
Smp_139160.1 SmLINC02535-IBu 0.90 3.86e-06 1.00e-04
Smp_139240.1 SmLINC02535-IBu 0.95 6.03e-08 7.67e-06
Smp_140720.1 SmLINC02535-IBu 0.92 5.35e-07 3.44e-05
Smp_155570.1 SmLINC02535-IBu 0.92 8.76e-07 4.86e-05
Smp_159650.1 SmLINC02535-IBu 0.90 3.77e-06 1.00e-04
Smp_162320.1 SmLINC02535-IBu 0.92 6.72e-07 4.04e-05
Smp_163700.1 SmLINC02535-IBu 0.96 2.88e-09 1.00e-06
Smp_164320.1 SmLINC02535-IBu 0.93 2.55e-07 2.06e-05
Smp_181070.1 SmLINC02535-IBu 0.91 2.26e-06 9.47e-05
Smp_187140.1 SmLINC02535-IBu 0.94 8.49e-08 9.68e-06
Smp_194380.1 SmLINC02535-IBu 0.96 8.59e-09 2.06e-06
Smp_194910.1 SmLINC02535-IBu 0.93 3.49e-07 2.56e-05
Smp_196830.1 SmLINC02535-IBu 0.96 7.10e-09 1.82e-06
Smp_202610.1 SmLINC02535-IBu 0.94 1.70e-07 1.56e-05
Smp_203030.1 SmLINC02535-IBu 0.91 2.15e-06 9.17e-05
Smp_205580.1 SmLINC02535-IBu 0.94 7.67e-08 9.03e-06