Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02455-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:4790144-4800656 - Strand: -


Fig. S5 for SmLINC02455-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC02455-IBu 0 -0.81 -2.44 -4.53 -4.60
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC02455-IBu 0.90 3.38e-06 1.00e-04
Smp_036270.4 SmLINC02455-IBu 0.92 6.11e-07 3.78e-05
Smp_051230.4 SmLINC02455-IBu 0.90 3.39e-06 1.00e-04
Smp_067980.1 SmLINC02455-IBu 0.90 4.03e-06 1.00e-04
Smp_077690.1 SmLINC02455-IBu 0.91 1.56e-06 7.33e-05
Smp_145810.2 SmLINC02455-IBu 0.90 2.68e-06 1.00e-04
Smp_160230.1 SmLINC02455-IBu 0.90 2.62e-06 1.00e-04
Smp_168080.2 SmLINC02455-IBu 0.93 2.39e-07 1.97e-05
Smp_188900.1 SmLINC02455-IBu 0.96 5.95e-09 1.62e-06
Smp_195070.1 SmLINC02455-IBu 0.95 3.22e-08 5.01e-06
Smp_202140.1 SmLINC02455-IBu 0.91 2.44e-06 1.00e-04