Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02444-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:3930574-3940374 - Strand: -


Fig. S5 for SmLINC02444-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_128510.1 0 3.20 1.49 10.55 5.33
SmLINC02444-IBu 0 1.88 5.09 8.31 5.89
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_194970.1 0 6.28 10.15 15.43 13.82

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017610.1 SmLINC02444-IBu 0.93 2.39e-07 1.97e-05
Smp_045200.1 SmLINC02444-IBu 0.90 2.65e-06 1.00e-04
Smp_084270.1 SmLINC02444-IBu 0.93 2.36e-07 1.95e-05
Smp_105730.1 SmLINC02444-IBu 0.90 2.71e-06 1.00e-04
Smp_118560.1 SmLINC02444-IBu 0.93 4.84e-07 3.21e-05
Smp_125200.1 SmLINC02444-IBu 0.90 3.43e-06 1.00e-04
Smp_125210.1 SmLINC02444-IBu 0.91 1.60e-06 7.43e-05
Smp_128510.1 SmLINC02444-IBu 0.95 5.54e-08 7.24e-06
Smp_134960.1 SmLINC02444-IBu 0.93 4.35e-07 2.98e-05
Smp_160360.1 SmLINC02444-IBu 0.90 2.64e-06 1.00e-04
Smp_163940.1 SmLINC02444-IBu 0.96 1.43e-08 2.90e-06
Smp_170280.1 SmLINC02444-IBu 0.90 4.50e-06 1.00e-04
Smp_175020.1 SmLINC02444-IBu 0.96 5.43e-09 1.52e-06
Smp_194970.1 SmLINC02444-IBu 0.91 2.49e-06 1.00e-04
Smp_194980.1 SmLINC02444-IBu 0.93 4.96e-07 3.26e-05
Smp_197400.1 SmLINC02444-IBu 0.90 3.26e-06 1.00e-04
Smp_200750.1 SmLINC02444-IBu 0.95 5.26e-08 6.99e-06