Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02430-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:3480421-3538177 - Strand: -


Fig. S5 for SmLINC02430-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02430-IBu 0 1.04 2.31 4.77 3.64
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_068270.1 0 0.21 0.34 12.30 11.22

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_068270.1 SmLINC02430-IBu 0.91 2.24e-06 9.44e-05
Smp_084270.1 SmLINC02430-IBu 0.91 1.49e-06 7.10e-05
Smp_125210.1 SmLINC02430-IBu 0.90 3.15e-06 1.00e-04
Smp_128510.1 SmLINC02430-IBu 0.90 3.49e-06 1.00e-04
Smp_170280.1 SmLINC02430-IBu 0.91 1.80e-06 8.10e-05
Smp_175020.1 SmLINC02430-IBu 0.91 1.89e-06 8.35e-05
Smp_200750.1 SmLINC02430-IBu 0.93 3.43e-07 2.53e-05