Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02429-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:3525820-3529404 - Strand: -


Fig. S5 for SmLINC02429-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC02429-IBu 0 -0.10 -1.22 -5.08 -5.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_036270.4 SmLINC02429-IBu 0.93 4.18e-07 2.90e-05
Smp_111640.1 SmLINC02429-IBu 0.91 1.49e-06 7.06e-05
Smp_184710.1 SmLINC02429-IBu 0.93 4.00e-07 2.81e-05
Smp_205450.1 SmLINC02429-IBu 0.91 1.25e-06 6.26e-05