Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02383-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:2476214-2478461 - Strand: +


Fig. S5 for SmLINC02383-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02383-IBu 0 0.00 4.30 8.91 6.79
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_154190.1 0 -1.93 -1.93 10.13 8.88
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_154180.1 0 5.56 0.00 15.37 13.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_034980.2 SmLINC02383-IBu 0.90 4.27e-06 1.00e-04
Smp_125200.1 SmLINC02383-IBu 0.92 9.41e-07 5.11e-05
Smp_154180.1 SmLINC02383-IBu 0.90 4.50e-06 1.00e-04
Smp_154190.1 SmLINC02383-IBu 0.95 5.26e-08 6.99e-06
Smp_160360.1 SmLINC02383-IBu 0.92 5.51e-07 3.51e-05
Smp_164550.1 SmLINC02383-IBu 0.93 3.60e-07 2.61e-05
Smp_197400.1 SmLINC02383-IBu 0.91 2.36e-06 9.78e-05