Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02374-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:2476194-2480618 - Strand: +


Fig. S5 for SmLINC02374-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02374-IBu 0 0.00 0.00 8.90 0.00
Smp_128510.1 0 3.20 1.49 10.55 5.33
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC02374-IBu 0.97 5.36e-10 3.41e-07
Smp_017610.1 SmLINC02374-IBu 0.93 3.06e-07 2.33e-05
Smp_081920.1 SmLINC02374-IBu 0.94 6.37e-08 7.96e-06
Smp_082580.1 SmLINC02374-IBu 0.94 1.87e-07 1.66e-05
Smp_084270.1 SmLINC02374-IBu 0.93 4.55e-07 3.08e-05
Smp_105730.1 SmLINC02374-IBu 0.97 1.92e-09 7.74e-07
Smp_118560.1 SmLINC02374-IBu 0.94 7.15e-08 8.61e-06
Smp_123200.1 SmLINC02374-IBu 0.93 2.04e-07 1.76e-05
Smp_125210.1 SmLINC02374-IBu 0.91 2.47e-06 1.00e-04
Smp_128510.1 SmLINC02374-IBu 0.94 1.65e-07 1.52e-05
Smp_131840.1 SmLINC02374-IBu 0.96 1.34e-08 2.78e-06
Smp_134960.1 SmLINC02374-IBu 0.94 1.84e-07 1.64e-05
Smp_154180.1 SmLINC02374-IBu 0.95 2.79e-08 4.55e-06
Smp_160360.1 SmLINC02374-IBu 0.91 1.45e-06 6.94e-05
Smp_163940.1 SmLINC02374-IBu 0.95 4.16e-08 5.96e-06
Smp_172520.1 SmLINC02374-IBu 0.97 5.80e-10 3.59e-07
Smp_175020.1 SmLINC02374-IBu 0.94 1.70e-07 1.55e-05
Smp_194960.1 SmLINC02374-IBu 0.94 1.03e-07 1.10e-05
Smp_194970.1 SmLINC02374-IBu 0.96 5.20e-09 1.48e-06
Smp_194980.1 SmLINC02374-IBu 0.97 3.64e-10 2.67e-07
Smp_197400.1 SmLINC02374-IBu 0.95 2.45e-08 4.16e-06
Smp_200750.1 SmLINC02374-IBu 0.91 1.86e-06 8.28e-05