Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02325-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:790996-803840 - Strand: -


Fig. S5 for SmLINC02325-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
SmLINC02325-IBu 0 -1.21 -1.93 -6.00 -7.20
Smp_055340.2 0 8.73 10.47 12.13 12.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_035090.2 SmLINC02325-IBu 0.96 6.27e-09 1.67e-06
Smp_055340.2 SmLINC02325-IBu -0.92 7.41e-07 4.32e-05
Smp_109240.1 SmLINC02325-IBu 0.90 4.09e-06 1.00e-04
Smp_149670.1 SmLINC02325-IBu 0.92 1.06e-06 5.59e-05
Smp_206200.1 SmLINC02325-IBu 0.90 3.45e-06 1.00e-04