Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02323-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:747202-755532 - Strand: -


Fig. S5 for SmLINC02323-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC02323-IBu 0 -0.27 -1.62 -5.06 -6.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC02323-IBu 0.91 1.54e-06 7.25e-05
Smp_036270.4 SmLINC02323-IBu 0.97 2.14e-09 8.33e-07
Smp_111640.1 SmLINC02323-IBu 0.91 1.41e-06 6.82e-05
Smp_125070.1 SmLINC02323-IBu 0.90 3.80e-06 1.00e-04
Smp_160230.1 SmLINC02323-IBu 0.92 7.02e-07 4.16e-05
Smp_184710.1 SmLINC02323-IBu 0.92 9.00e-07 4.95e-05
Smp_204360.1 SmLINC02323-IBu 0.91 2.11e-06 9.06e-05
Smp_205450.1 SmLINC02323-IBu 0.91 2.14e-06 9.14e-05