Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02317-IBu Data

Chromosome: Chr 3 - Coordinate: Chr 3:501108-506756 - Strand: +


Fig. S5 for SmLINC02317-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
SmLINC02317-IBu 0 -0.23 -5.11 -7.32 -7.30
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 SmLINC02317-IBu 0.96 3.45e-09 1.13e-06
Smp_035200.3 SmLINC02317-IBu 0.91 2.27e-06 9.51e-05
Smp_036270.4 SmLINC02317-IBu 0.95 4.80e-08 6.57e-06
Smp_077690.1 SmLINC02317-IBu 0.93 3.93e-07 2.78e-05
Smp_111640.1 SmLINC02317-IBu 0.90 2.89e-06 1.00e-04
Smp_112090.1 SmLINC02317-IBu 0.95 5.52e-08 7.22e-06
Smp_125070.1 SmLINC02317-IBu 0.90 4.30e-06 1.00e-04
Smp_168080.2 SmLINC02317-IBu 0.92 5.27e-07 3.40e-05
Smp_182090.1 SmLINC02317-IBu 0.94 8.42e-08 9.62e-06
Smp_184760.1 SmLINC02317-IBu 0.93 2.04e-07 1.77e-05