Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02312-IBu Data

Chromosome: Chr 2.unplaced.SC 0213 - Coordinate: Chr 2.unplaced.SC 0213:190244-207123 - Strand: +


Fig. S5 for SmLINC02312-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02312-IBu 0 3.54 1.94 6.13 8.13
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC02312-IBu 0.91 1.51e-06 7.14e-05
Smp_037720.1 SmLINC02312-IBu 0.93 3.33e-07 2.48e-05
Smp_083430.1 SmLINC02312-IBu 0.90 3.12e-06 1.00e-04
Smp_123880.1 SmLINC02312-IBu 0.90 2.72e-06 1.00e-04
Smp_131410.1 SmLINC02312-IBu 0.91 1.59e-06 7.40e-05
Smp_136730.1 SmLINC02312-IBu 0.90 3.45e-06 1.00e-04
Smp_139240.1 SmLINC02312-IBu 0.91 2.38e-06 9.84e-05
Smp_164320.1 SmLINC02312-IBu 0.90 3.24e-06 1.00e-04
Smp_187140.1 SmLINC02312-IBu 0.90 3.30e-06 1.00e-04
Smp_194380.1 SmLINC02312-IBu 0.91 1.47e-06 7.02e-05
Smp_196830.1 SmLINC02312-IBu 0.92 5.74e-07 3.61e-05