Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02250-IBu Data

Chromosome: Chr 2.unplaced.SC 0120 - Coordinate: Chr 2.unplaced.SC 0120:182659-185383 - Strand: -


Fig. S5 for SmLINC02250-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_034980.2 0 8.75 0.00 11.30 11.03
SmLINC02250-IBu 0 0.00 7.26 10.81 11.09
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024180.2 SmLINC02250-IBu 0.90 3.28e-06 1.00e-04
Smp_031040.1 SmLINC02250-IBu 0.94 6.32e-08 7.91e-06
Smp_033260.1 SmLINC02250-IBu 0.94 1.82e-07 1.63e-05
Smp_034980.2 SmLINC02250-IBu 0.90 2.62e-06 1.00e-04
Smp_038870.2 SmLINC02250-IBu 0.94 8.23e-08 9.47e-06
Smp_040970.2 SmLINC02250-IBu 0.97 1.74e-10 1.66e-07
Smp_050350.3 SmLINC02250-IBu 0.92 9.49e-07 5.14e-05
Smp_051210.3 SmLINC02250-IBu 0.95 4.80e-08 6.57e-06
Smp_052280.2 SmLINC02250-IBu 0.94 1.19e-07 1.22e-05
Smp_055340.2 SmLINC02250-IBu 0.92 6.20e-07 3.82e-05
Smp_056460.1 SmLINC02250-IBu 0.95 4.90e-08 6.66e-06
Smp_058660.1 SmLINC02250-IBu 0.91 1.50e-06 7.13e-05
Smp_079420.1 SmLINC02250-IBu 0.96 2.35e-09 8.85e-07
Smp_090140.1 SmLINC02250-IBu 0.93 2.02e-07 1.75e-05
Smp_094050.1 SmLINC02250-IBu 0.93 2.83e-07 2.21e-05
Smp_095410.1 SmLINC02250-IBu 0.90 3.15e-06 1.00e-04
Smp_123550.1 SmLINC02250-IBu 0.90 2.58e-06 1.00e-04
Smp_137000.2 SmLINC02250-IBu 0.93 2.22e-07 1.87e-05
Smp_137320.1 SmLINC02250-IBu 0.90 4.84e-06 1.00e-04
Smp_141680.1 SmLINC02250-IBu 0.90 2.75e-06 1.00e-04
Smp_145400.1 SmLINC02250-IBu 0.95 2.22e-08 3.89e-06
Smp_150980.2 SmLINC02250-IBu 0.93 3.39e-07 2.50e-05
Smp_151120.1 SmLINC02250-IBu 0.93 4.62e-07 3.11e-05
Smp_156930.1 SmLINC02250-IBu 0.90 4.30e-06 1.00e-04
Smp_159070.2 SmLINC02250-IBu 0.92 6.02e-07 3.74e-05
Smp_172480.1 SmLINC02250-IBu 0.95 1.52e-08 3.03e-06
Smp_172960.1 SmLINC02250-IBu 0.94 6.18e-08 7.79e-06
Smp_194860.1 SmLINC02250-IBu 0.96 7.19e-09 1.83e-06
Smp_203090.1 SmLINC02250-IBu 0.95 2.72e-08 4.46e-06
Smp_205270.1 SmLINC02250-IBu 0.95 5.63e-08 7.32e-06