Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02247-IBu Data

Chromosome: Chr 2.unplaced.SC 0120 - Coordinate: Chr 2.unplaced.SC 0120:173051-173818 - Strand: -


Fig. S5 for SmLINC02247-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_056360.3 0 -9.92 -10.13 2.08 1.89
Smp_170280.1 0 2.81 5.87 10.21 9.37
SmLINC02247-IBu 0 0.00 1.49 9.41 9.46
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 SmLINC02247-IBu 0.92 7.10e-07 4.19e-05
Smp_031770.10 SmLINC02247-IBu 0.91 1.28e-06 6.38e-05
Smp_034980.2 SmLINC02247-IBu 0.98 2.84e-11 5.30e-08
Smp_040970.2 SmLINC02247-IBu 0.92 7.23e-07 4.25e-05
Smp_056360.3 SmLINC02247-IBu 0.94 7.86e-08 9.18e-06
Smp_058660.1 SmLINC02247-IBu 0.90 2.93e-06 1.00e-04
Smp_068270.1 SmLINC02247-IBu 0.93 4.08e-07 2.85e-05
Smp_095410.1 SmLINC02247-IBu 0.91 1.85e-06 8.25e-05
Smp_137000.2 SmLINC02247-IBu 0.90 3.80e-06 1.00e-04
Smp_145400.1 SmLINC02247-IBu 0.92 9.68e-07 5.21e-05
Smp_150980.2 SmLINC02247-IBu 0.92 7.96e-07 4.54e-05
Smp_164550.1 SmLINC02247-IBu 0.90 2.53e-06 1.00e-04
Smp_170280.1 SmLINC02247-IBu 0.90 4.43e-06 1.00e-04
Smp_172480.1 SmLINC02247-IBu 0.93 3.80e-07 2.72e-05
Smp_172960.1 SmLINC02247-IBu 0.90 3.68e-06 1.00e-04
Smp_205270.1 SmLINC02247-IBu 0.91 1.56e-06 7.31e-05