Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02217-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:34350774-34357528 - Strand: +


Fig. S5 for SmLINC02217-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC02217-IBu 0 3.64 1.72 8.38 8.71
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015850.2 SmLINC02217-IBu -0.91 1.76e-06 7.96e-05
Smp_024180.2 SmLINC02217-IBu 0.92 1.12e-06 5.79e-05
Smp_031040.1 SmLINC02217-IBu 0.95 1.51e-08 3.00e-06
Smp_033260.1 SmLINC02217-IBu 0.97 5.15e-10 3.32e-07
Smp_038870.2 SmLINC02217-IBu 0.95 4.55e-08 6.33e-06
Smp_040970.2 SmLINC02217-IBu 0.95 1.64e-08 3.18e-06
Smp_050350.3 SmLINC02217-IBu 0.94 1.26e-07 1.27e-05
Smp_051210.3 SmLINC02217-IBu 0.93 2.94e-07 2.27e-05
Smp_052280.2 SmLINC02217-IBu 0.92 6.81e-07 4.07e-05
Smp_055340.2 SmLINC02217-IBu 0.90 4.38e-06 1.00e-04
Smp_056460.1 SmLINC02217-IBu 0.96 8.02e-09 1.97e-06
Smp_058660.1 SmLINC02217-IBu 0.95 1.48e-08 2.97e-06
Smp_079420.1 SmLINC02217-IBu 0.98 1.51e-10 1.51e-07
Smp_094050.1 SmLINC02217-IBu 0.93 4.77e-07 3.18e-05
Smp_095410.1 SmLINC02217-IBu 0.90 2.56e-06 1.00e-04
Smp_123550.1 SmLINC02217-IBu 0.95 2.94e-08 4.71e-06
Smp_137000.2 SmLINC02217-IBu 0.97 1.54e-09 6.72e-07
Smp_137320.1 SmLINC02217-IBu 0.93 2.27e-07 1.90e-05
Smp_141680.1 SmLINC02217-IBu 0.92 5.60e-07 3.55e-05
Smp_145400.1 SmLINC02217-IBu 0.95 1.60e-08 3.12e-06
Smp_150980.2 SmLINC02217-IBu 0.92 8.30e-07 4.68e-05
Smp_151120.1 SmLINC02217-IBu 0.97 1.96e-09 7.85e-07
Smp_156930.1 SmLINC02217-IBu 0.97 5.14e-10 3.32e-07
Smp_159070.2 SmLINC02217-IBu 0.95 4.79e-08 6.56e-06
Smp_166860.1 SmLINC02217-IBu 0.94 1.76e-07 1.59e-05
Smp_172480.1 SmLINC02217-IBu 0.97 1.96e-09 7.85e-07
Smp_172960.1 SmLINC02217-IBu 0.99 2.22e-13 2.63e-09
Smp_192780.1 SmLINC02217-IBu 0.91 1.51e-06 7.16e-05
Smp_194860.1 SmLINC02217-IBu 0.99 2.05e-14 6.13e-10
Smp_203090.1 SmLINC02217-IBu 0.98 2.75e-12 1.23e-08
Smp_205270.1 SmLINC02217-IBu 0.96 7.31e-09 1.85e-06