Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02150-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:25746145-25750620 - Strand: +


Fig. S5 for SmLINC02150-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02150-IBu 0 1.44 4.04 5.34 4.14
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_045200.1 0 3.00 7.71 11.33 10.66

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_045200.1 SmLINC02150-IBu 0.91 1.70e-06 7.77e-05
Smp_118560.1 SmLINC02150-IBu 0.92 8.25e-07 4.66e-05
Smp_125200.1 SmLINC02150-IBu 0.96 8.24e-09 2.01e-06
Smp_129110.1 SmLINC02150-IBu 0.92 7.49e-07 4.35e-05
Smp_160360.1 SmLINC02150-IBu 0.90 3.10e-06 1.00e-04
Smp_163940.1 SmLINC02150-IBu 0.91 2.15e-06 9.16e-05
Smp_164550.1 SmLINC02150-IBu 0.90 3.78e-06 1.00e-04
Smp_175020.1 SmLINC02150-IBu 0.93 4.17e-07 2.89e-05
Smp_200750.1 SmLINC02150-IBu 0.90 4.15e-06 1.00e-04