Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02120-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:22934475-22937447 - Strand: +


Fig. S5 for SmLINC02120-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_154010.1 0 -1.98 -1.23 -7.66 -10.11
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC02120-IBu 0 2.99 -7.55 4.81 5.21
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 SmLINC02120-IBu 0.91 1.76e-06 7.96e-05
Smp_033260.1 SmLINC02120-IBu 0.93 3.42e-07 2.52e-05
Smp_038870.2 SmLINC02120-IBu 0.90 3.34e-06 1.00e-04
Smp_040970.2 SmLINC02120-IBu 0.93 3.99e-07 2.81e-05
Smp_050350.3 SmLINC02120-IBu 0.90 4.02e-06 1.00e-04
Smp_056460.1 SmLINC02120-IBu 0.93 4.56e-07 3.08e-05
Smp_079420.1 SmLINC02120-IBu 0.94 1.44e-07 1.39e-05
Smp_094050.1 SmLINC02120-IBu 0.90 3.26e-06 1.00e-04
Smp_123550.1 SmLINC02120-IBu 0.90 3.18e-06 1.00e-04
Smp_137000.2 SmLINC02120-IBu 0.91 1.39e-06 6.73e-05
Smp_151120.1 SmLINC02120-IBu 0.90 2.81e-06 1.00e-04
Smp_154010.1 SmLINC02120-IBu -0.90 2.77e-06 1.00e-04
Smp_156930.1 SmLINC02120-IBu 0.91 1.66e-06 7.63e-05
Smp_159070.2 SmLINC02120-IBu 0.95 4.76e-08 6.53e-06
Smp_172480.1 SmLINC02120-IBu 0.91 1.58e-06 7.36e-05
Smp_172960.1 SmLINC02120-IBu 0.93 3.27e-07 2.45e-05
Smp_194860.1 SmLINC02120-IBu 0.94 9.94e-08 1.07e-05
Smp_203090.1 SmLINC02120-IBu 0.94 1.07e-07 1.14e-05
Smp_205270.1 SmLINC02120-IBu 0.91 2.24e-06 9.42e-05