Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02117-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:22778356-22779838 - Strand: -


Fig. S5 for SmLINC02117-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02117-IBu 0 -4.43 -0.46 1.87 4.79
Smp_130970.1 0 4.67 2.67 4.97 10.18
Smp_089270.1 0 3.49 0.00 4.50 10.21
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_105450.2 0 0.07 -1.43 6.91 10.46
Smp_137460.1 0 4.80 0.00 4.12 10.48
Smp_138360.1 0 -0.10 -4.27 4.84 10.60
Smp_181070.1 0 0.13 0.63 8.07 11.05
Smp_041540.1 0 3.75 -1.68 7.22 11.17
Smp_070540.1 0 2.28 0.82 8.01 11.54
Smp_170840.1 0 3.57 0.00 5.93 11.86
Smp_164400.1 0 1.88 2.19 6.73 12.73
Smp_167830.1 0 0.00 0.00 6.17 12.87
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_152150.1 0 0.00 0.00 8.69 15.96

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_041540.1 SmLINC02117-IBu 0.93 2.04e-07 1.76e-05
Smp_070540.1 SmLINC02117-IBu 0.90 3.76e-06 1.00e-04
Smp_089270.1 SmLINC02117-IBu 0.93 2.99e-07 2.30e-05
Smp_105450.2 SmLINC02117-IBu 0.91 1.37e-06 6.67e-05
Smp_130100.1 SmLINC02117-IBu 0.91 1.83e-06 8.19e-05
Smp_130970.1 SmLINC02117-IBu 0.90 3.72e-06 1.00e-04
Smp_137460.1 SmLINC02117-IBu 0.94 9.25e-08 1.02e-05
Smp_138360.1 SmLINC02117-IBu 0.91 1.81e-06 8.11e-05
Smp_152150.1 SmLINC02117-IBu 0.96 5.88e-09 1.60e-06
Smp_164400.1 SmLINC02117-IBu 0.95 2.59e-08 4.32e-06
Smp_167830.1 SmLINC02117-IBu 0.93 4.99e-07 3.28e-05
Smp_170840.1 SmLINC02117-IBu 0.94 7.99e-08 9.28e-06
Smp_181070.1 SmLINC02117-IBu 0.92 1.14e-06 5.87e-05
Smp_203030.1 SmLINC02117-IBu 0.90 4.04e-06 1.00e-04