Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02103-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:21739621-21741374 - Strand: -


Fig. S5 for SmLINC02103-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02103-IBu 0 0.81 1.28 3.43 5.04
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_194910.1 0 0.37 1.92 8.43 11.13
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_136730.1 0 1.59 3.88 8.90 11.96
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_205580.1 0 2.85 4.80 9.78 12.43
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_139240.1 0 1.42 4.34 10.58 13.09
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC02103-IBu 0.94 1.72e-07 1.57e-05
Smp_016490.2 SmLINC02103-IBu 0.91 1.42e-06 6.85e-05
Smp_028870.1 SmLINC02103-IBu 0.92 8.09e-07 4.59e-05
Smp_037720.1 SmLINC02103-IBu 0.91 2.10e-06 9.01e-05
Smp_083430.1 SmLINC02103-IBu 0.94 1.32e-07 1.31e-05
Smp_085180.1 SmLINC02103-IBu 0.92 6.76e-07 4.05e-05
Smp_102780.1 SmLINC02103-IBu 0.92 5.58e-07 3.54e-05
Smp_123880.1 SmLINC02103-IBu 0.93 2.25e-07 1.89e-05
Smp_130100.1 SmLINC02103-IBu 0.90 4.71e-06 1.00e-04
Smp_131410.1 SmLINC02103-IBu 0.93 2.85e-07 2.22e-05
Smp_131490.1 SmLINC02103-IBu 0.92 1.16e-06 5.94e-05
Smp_136730.1 SmLINC02103-IBu 0.90 4.31e-06 1.00e-04
Smp_137720.1 SmLINC02103-IBu 0.91 1.38e-06 6.71e-05
Smp_137810.1 SmLINC02103-IBu 0.95 5.65e-08 7.34e-06
Smp_139240.1 SmLINC02103-IBu 0.92 7.75e-07 4.46e-05
Smp_140720.1 SmLINC02103-IBu 0.90 3.08e-06 1.00e-04
Smp_155570.1 SmLINC02103-IBu 0.92 1.11e-06 5.76e-05
Smp_159650.1 SmLINC02103-IBu 0.91 1.69e-06 7.74e-05
Smp_162320.1 SmLINC02103-IBu 0.91 1.78e-06 8.01e-05
Smp_163700.1 SmLINC02103-IBu 0.93 2.38e-07 1.96e-05
Smp_164320.1 SmLINC02103-IBu 0.93 4.33e-07 2.97e-05
Smp_187140.1 SmLINC02103-IBu 0.92 7.42e-07 4.33e-05
Smp_194380.1 SmLINC02103-IBu 0.93 2.30e-07 1.92e-05
Smp_194910.1 SmLINC02103-IBu 0.91 2.05e-06 8.85e-05
Smp_196830.1 SmLINC02103-IBu 0.93 3.83e-07 2.73e-05
Smp_202610.1 SmLINC02103-IBu 0.93 4.41e-07 3.01e-05
Smp_203030.1 SmLINC02103-IBu 0.90 3.53e-06 1.00e-04
Smp_205580.1 SmLINC02103-IBu 0.92 8.83e-07 4.89e-05