Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02093-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:20889735-20917731 - Strand: -


Fig. S5 for SmLINC02093-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02093-IBu 0 -2.65 1.62 3.08 4.75
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC02093-IBu 0.90 2.73e-06 1.00e-04
Smp_083430.1 SmLINC02093-IBu 0.91 2.37e-06 9.82e-05
Smp_123880.1 SmLINC02093-IBu 0.90 2.64e-06 1.00e-04
Smp_131410.1 SmLINC02093-IBu 0.90 3.29e-06 1.00e-04
Smp_163700.1 SmLINC02093-IBu 0.90 2.69e-06 1.00e-04
Smp_164320.1 SmLINC02093-IBu 0.90 4.17e-06 1.00e-04
Smp_194380.1 SmLINC02093-IBu 0.90 3.53e-06 1.00e-04
Smp_202610.1 SmLINC02093-IBu 0.90 4.80e-06 1.00e-04