Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02039-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:18937836-18938988 - Strand: -


Fig. 6A for SmLINC02039-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_044280.2 0 -10.78 -4.06 -10.78 -10.78
Smp_071380.2 0 -3.62 -7.62 -10.38 -10.26
Smp_058360.2 0 -2.02 -6.41 -4.83 -10.18
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_163390.1 0 -8.96 -8.96 -8.96 -8.96
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_037020.1 0 -2.12 -8.24 -8.43 -8.13
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_114910.1 0 -3.08 -7.52 -7.91 -7.70
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_204480.1 0 -1.73 -7.02 -4.14 -7.02
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_205970.1 0 -3.84 -6.54 -6.54 -6.54
Smp_042270.1 0 -6.69 -4.66 -8.17 -6.53
Smp_030500.1 0 -2.77 -6.42 -6.74 -6.44
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_079220.1 0 -2.48 -4.55 -6.52 -5.99
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90
Smp_214150.1 0 -3.99 -7.32 -3.18 -5.90
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_201610.1 0 -0.38 -1.66 -5.28 -5.12
Smp_074560.1 0 -3.36 -3.15 -2.58 -5.11
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_034550.1 0 -2.91 -5.29 -2.60 -4.93
Smp_119730.1 0 -2.59 -2.93 -5.18 -4.91
Smp_049230.1 0 -2.32 -9.18 -1.58 -4.77
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_152260.1 0 -3.17 -4.39 -4.03 -4.71
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_129190.1 0 -4.25 -6.94 -3.48 -4.65
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_125440.1 0 -4.16 -3.48 -3.28 -4.46
Smp_139250.1 0 -4.34 -6.53 -2.10 -4.27
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_002640.1 0 -3.78 -3.97 -2.17 -4.00
Smp_021730.1 0 -2.52 -3.78 -4.00 -3.90
Smp_205190.1 0 -5.03 -3.88 -4.78 -3.78
Smp_009390.1 0 -2.49 -4.72 -3.30 -3.76
Smp_149200.2 0 -2.21 -4.97 -3.95 -3.74
Smp_155890.1 0 -3.01 -4.45 -2.70 -3.71
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_029930.1 0 -2.45 -5.79 -4.41 -2.49
Smp_096290.2 0 -2.27 -6.00 -3.25 -2.18
Smp_097490.1 0 -3.10 -5.15 -2.72 -1.99
Smp_015980.1 0 -2.53 -5.79 -2.18 -1.48

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_002640.1 SmLINC02039-IBu 0.87 2.30e-05 4.00e-04
Smp_003770.1 SmLINC02039-IBu 0.86 3.72e-05 6.00e-04
Smp_005860.1 SmLINC02039-IBu 0.83 1.00e-04 1.60e-03
Smp_006560.1 SmLINC02039-IBu 0.87 2.23e-05 4.00e-04
Smp_009390.1 SmLINC02039-IBu 0.83 1.00e-04 1.40e-03
Smp_009650.2 SmLINC02039-IBu 0.85 4.57e-05 8.00e-04
Smp_014400.5 SmLINC02039-IBu 0.82 1.00e-04 1.80e-03
Smp_015980.1 SmLINC02039-IBu 0.88 1.38e-05 3.00e-04
Smp_016200.1 SmLINC02039-IBu 0.91 1.49e-06 6.81e-05
Smp_018880.1 SmLINC02039-IBu 0.85 5.31e-05 8.00e-04
Smp_019750.2 SmLINC02039-IBu 0.87 2.46e-05 5.00e-04
Smp_021730.1 SmLINC02039-IBu 0.87 2.05e-05 4.00e-04
Smp_022430.1 SmLINC02039-IBu 0.86 3.77e-05 6.00e-04
Smp_026450.1 SmLINC02039-IBu 0.83 1.00e-04 1.50e-03
Smp_028990.2 SmLINC02039-IBu 0.91 2.41e-06 9.59e-05
Smp_029930.1 SmLINC02039-IBu 0.82 1.00e-04 1.80e-03
Smp_030500.1 SmLINC02039-IBu 0.81 2.00e-04 2.70e-03
Smp_033610.1 SmLINC02039-IBu 0.83 1.00e-04 1.50e-03
Smp_034550.1 SmLINC02039-IBu 0.81 1.00e-04 2.20e-03
Smp_035270.1 SmLINC02039-IBu 0.93 4.48e-07 2.91e-05
Smp_036400.2 SmLINC02039-IBu 0.84 7.09e-05 1.10e-03
Smp_037020.1 SmLINC02039-IBu 0.83 1.00e-04 1.40e-03
Smp_038560.6 SmLINC02039-IBu 0.87 1.81e-05 4.00e-04
Smp_042160.1 SmLINC02039-IBu 0.83 1.00e-04 1.50e-03
Smp_042270.1 SmLINC02039-IBu 0.80 2.00e-04 2.80e-03
Smp_044280.2 SmLINC02039-IBu 0.89 5.11e-06 1.00e-04
Smp_046090.1 SmLINC02039-IBu 0.85 5.85e-05 9.00e-04
Smp_049230.1 SmLINC02039-IBu 0.80 2.00e-04 3.10e-03
Smp_052060.1 SmLINC02039-IBu 0.87 2.01e-05 4.00e-04
Smp_057060.1 SmLINC02039-IBu 0.86 3.14e-05 6.00e-04
Smp_057790.1 SmLINC02039-IBu 0.85 4.21e-05 7.00e-04
Smp_058360.2 SmLINC02039-IBu 0.84 6.58e-05 1.00e-03
Smp_059930.1 SmLINC02039-IBu 0.91 1.37e-06 6.44e-05
Smp_061870.1 SmLINC02039-IBu 0.80 3.00e-04 3.10e-03
Smp_061940.1 SmLINC02039-IBu 0.83 9.10e-05 1.30e-03
Smp_071380.2 SmLINC02039-IBu 0.85 4.79e-05 8.00e-04
Smp_074560.1 SmLINC02039-IBu 0.86 3.74e-05 6.00e-04
Smp_079220.1 SmLINC02039-IBu 0.80 2.00e-04 2.90e-03
Smp_096290.2 SmLINC02039-IBu 0.85 5.88e-05 9.00e-04
Smp_097490.1 SmLINC02039-IBu 0.86 2.51e-05 5.00e-04
Smp_102670.1 SmLINC02039-IBu 0.83 9.66e-05 1.30e-03
Smp_105610.1 SmLINC02039-IBu 0.85 4.87e-05 8.00e-04
Smp_106390.1 SmLINC02039-IBu 0.86 2.61e-05 5.00e-04
Smp_108050.1 SmLINC02039-IBu 0.82 1.00e-04 2.00e-03
Smp_113710.1 SmLINC02039-IBu 0.82 1.00e-04 1.80e-03
Smp_114910.1 SmLINC02039-IBu 0.88 1.09e-05 2.00e-04
Smp_119730.1 SmLINC02039-IBu 0.88 1.17e-05 2.00e-04
Smp_120920.3 SmLINC02039-IBu 0.90 4.09e-06 1.00e-04
Smp_125440.1 SmLINC02039-IBu 0.85 4.03e-05 7.00e-04
Smp_129190.1 SmLINC02039-IBu 0.88 9.17e-06 2.00e-04
Smp_133770.1 SmLINC02039-IBu 0.86 3.30e-05 6.00e-04
Smp_135250.1 SmLINC02039-IBu 0.85 4.42e-05 7.00e-04
Smp_139250.1 SmLINC02039-IBu 0.86 3.86e-05 7.00e-04
Smp_148800.1 SmLINC02039-IBu 0.90 2.96e-06 1.00e-04
Smp_149190.1 SmLINC02039-IBu 0.84 8.18e-05 1.20e-03
Smp_149200.2 SmLINC02039-IBu 0.90 4.62e-06 1.00e-04
Smp_150690.2 SmLINC02039-IBu 0.84 7.39e-05 1.10e-03
Smp_152260.1 SmLINC02039-IBu 0.84 6.35e-05 1.00e-03
Smp_153240.1 SmLINC02039-IBu 0.88 1.05e-05 2.00e-04
Smp_154300.1 SmLINC02039-IBu 0.92 8.32e-07 4.50e-05
Smp_155890.1 SmLINC02039-IBu 0.84 7.27e-05 1.10e-03
Smp_157310.1 SmLINC02039-IBu 0.88 1.29e-05 3.00e-04
Smp_163390.1 SmLINC02039-IBu 0.88 1.24e-05 3.00e-04
Smp_178240.1 SmLINC02039-IBu 0.90 2.55e-06 1.00e-04
Smp_184460.1 SmLINC02039-IBu 0.81 2.00e-04 2.50e-03
Smp_185360.1 SmLINC02039-IBu 0.83 9.14e-05 1.30e-03
Smp_192880.1 SmLINC02039-IBu 0.81 2.00e-04 2.40e-03
Smp_194040.1 SmLINC02039-IBu 0.88 1.22e-05 3.00e-04
Smp_201610.1 SmLINC02039-IBu 0.81 2.00e-04 2.30e-03
Smp_204480.1 SmLINC02039-IBu 0.90 4.71e-06 1.00e-04
Smp_205190.1 SmLINC02039-IBu 0.82 1.00e-04 1.70e-03
Smp_205900.1 SmLINC02039-IBu 0.83 1.00e-04 1.60e-03
Smp_205970.1 SmLINC02039-IBu 0.94 9.09e-08 9.60e-06
Smp_214150.1 SmLINC02039-IBu 0.87 1.53e-05 3.00e-04
Fig. S5 for SmLINC02039-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_016200.1 0 -3.14 -11.01 -6.75 -11.01
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_035270.1 0 -9.88 -14.08 -13.91 -7.32
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_016200.1 SmLINC02039-IBu 0.91 1.49e-06 7.06e-05
Smp_035270.1 SmLINC02039-IBu 0.93 4.48e-07 3.04e-05
Smp_178240.1 SmLINC02039-IBu 0.90 2.55e-06 1.00e-04