Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02038-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:18937836-18938988 - Strand: -


Fig. 6A for SmLINC02038-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_123000.1 0 0.49 -5.87 -12.08 -12.08
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_090930.2 0 -0.51 -10.22 -10.22 -10.22
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_175890.1 0 -0.96 -2.50 -8.62 -9.58
Smp_205480.1 0 0.40 -2.39 -9.52 -9.52
Smp_046800.2 0 -1.01 -9.41 -9.41 -9.41
Smp_002390.1 0 -0.32 -2.32 -7.83 -9.06
Smp_178620.1 0 -1.14 -2.86 -9.00 -9.00
Smp_110400.1 0 0.09 -0.79 -8.02 -8.98
Smp_205330.1 0 0.40 -0.14 -11.58 -8.81
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
Smp_161000.2 0 -1.02 -2.38 -7.73 -8.46
Smp_026160.2 0 0.93 -2.82 -7.30 -8.39
Smp_177520.1 0 -1.05 -1.72 -9.36 -8.37
Smp_191250.1 0 -0.43 -3.38 -7.55 -8.30
Smp_205780.1 0 1.12 -3.78 -8.26 -8.26
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76
Smp_000380.1 0 -0.32 -2.14 -6.41 -7.59
Smp_117990.1 0 -0.28 -2.23 -6.60 -7.02
Smp_074200.1 0 -1.40 -4.07 -6.05 -6.98
Smp_196700.1 0 0.04 -8.78 -6.55 -6.98
Smp_162070.1 0 -0.47 -3.26 -7.76 -6.95
Smp_021060.1 0 -1.00 -2.60 -4.96 -6.87
Smp_018510.1 0 -0.95 -2.76 -7.05 -6.82
Smp_046930.1 0 -0.70 -2.23 -5.64 -6.64
Smp_193480.1 0 0.76 -0.20 -6.53 -6.53
Smp_204090.1 0 0.38 0.16 -4.38 -6.42
Smp_114220.1 0 -0.84 -2.09 -5.04 -6.34
Smp_203080.1 0 -0.76 -1.73 -8.70 -6.32
Smp_059210.2 0 -0.42 -0.55 -4.87 -6.09
Smp_178530.1 0 -1.33 -2.48 -5.11 -6.02
Smp_021330.1 0 0.03 -9.72 -5.60 -5.99
Smp_004530.1 0 -0.23 -3.64 -5.83 -5.83
Smp_111320.1 0 -0.97 -2.64 -4.04 -5.54
Smp_088610.1 0 -1.02 -3.23 -3.96 -5.44
Smp_038510.2 0 -0.35 -1.52 -5.20 -5.10
Smp_129290.1 0 -0.51 -1.30 -6.92 -4.90
Smp_186960.1 0 -1.00 -1.76 -4.20 -4.74
Smp_097830.1 0 -0.72 -1.42 -3.72 -4.56
Smp_213890.1 0 -1.00 -1.46 -4.08 -4.51
Smp_080920.3 0 -0.58 -3.50 -2.71 -4.51
Smp_125140.1 0 -0.33 -4.66 -7.65 -4.46
Smp_120920.2 0 -0.10 -2.98 -3.87 -4.44
Smp_119260.1 0 0.00 -1.60 -4.13 -4.36
Smp_136240.3 0 0.29 -2.67 -3.72 -4.15
Smp_082430.1 0 0.56 -9.20 -5.69 -4.14
Smp_212100.1 0 -0.28 -1.09 -4.30 -3.94
Smp_178400.1 0 -0.69 -3.92 -8.55 -3.91
Smp_202590.1 0 0.93 -0.68 -5.97 -3.65
Smp_139790.1 0 -0.75 -6.56 -6.76 -3.63
Smp_082240.1 0 -0.22 -3.45 -3.39 -3.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000380.1 SmLINC02038-IBu 0.84 8.15e-05 1.20e-03
Smp_002390.1 SmLINC02038-IBu 0.89 7.89e-06 2.00e-04
Smp_004530.1 SmLINC02038-IBu 0.84 8.43e-05 1.20e-03
Smp_009320.1 SmLINC02038-IBu 0.92 1.03e-06 5.27e-05
Smp_018510.1 SmLINC02038-IBu 0.84 6.91e-05 1.00e-03
Smp_021060.1 SmLINC02038-IBu 0.81 2.00e-04 2.70e-03
Smp_021330.1 SmLINC02038-IBu 0.85 5.21e-05 8.00e-04
Smp_026160.2 SmLINC02038-IBu 0.86 2.98e-05 5.00e-04
Smp_028990.3 SmLINC02038-IBu 0.82 1.00e-04 1.70e-03
Smp_038510.2 SmLINC02038-IBu 0.80 2.00e-04 3.00e-03
Smp_046800.2 SmLINC02038-IBu 0.85 4.65e-05 8.00e-04
Smp_046930.1 SmLINC02038-IBu 0.81 2.00e-04 2.40e-03
Smp_059210.2 SmLINC02038-IBu 0.89 5.18e-06 1.00e-04
Smp_074200.1 SmLINC02038-IBu 0.88 9.90e-06 2.00e-04
Smp_080920.3 SmLINC02038-IBu 0.85 4.27e-05 7.00e-04
Smp_082240.1 SmLINC02038-IBu 0.85 4.93e-05 8.00e-04
Smp_082430.1 SmLINC02038-IBu 0.83 8.95e-05 1.30e-03
Smp_088610.1 SmLINC02038-IBu 0.90 3.44e-06 1.00e-04
Smp_090930.2 SmLINC02038-IBu 0.86 2.62e-05 5.00e-04
Smp_097830.1 SmLINC02038-IBu 0.81 2.00e-04 2.60e-03
Smp_110400.1 SmLINC02038-IBu 0.80 3.00e-04 3.20e-03
Smp_111320.1 SmLINC02038-IBu 0.90 3.16e-06 1.00e-04
Smp_114220.1 SmLINC02038-IBu 0.88 9.32e-06 2.00e-04
Smp_117990.1 SmLINC02038-IBu 0.80 2.00e-04 2.80e-03
Smp_119260.1 SmLINC02038-IBu 0.88 1.40e-05 3.00e-04
Smp_120920.2 SmLINC02038-IBu 0.80 3.00e-04 3.40e-03
Smp_123000.1 SmLINC02038-IBu 0.86 3.20e-05 6.00e-04
Smp_125140.1 SmLINC02038-IBu 0.83 1.00e-04 1.50e-03
Smp_129290.1 SmLINC02038-IBu 0.88 1.03e-05 2.00e-04
Smp_136240.3 SmLINC02038-IBu 0.86 2.55e-05 5.00e-04
Smp_139790.1 SmLINC02038-IBu 0.80 2.00e-04 2.90e-03
Smp_161000.2 SmLINC02038-IBu 0.80 3.00e-04 3.20e-03
Smp_162070.1 SmLINC02038-IBu 0.82 1.00e-04 1.80e-03
Smp_175890.1 SmLINC02038-IBu 0.82 1.00e-04 1.70e-03
Smp_177520.1 SmLINC02038-IBu 0.80 2.00e-04 2.80e-03
Smp_178400.1 SmLINC02038-IBu 0.86 2.68e-05 5.00e-04
Smp_178530.1 SmLINC02038-IBu 0.83 1.00e-04 1.40e-03
Smp_178620.1 SmLINC02038-IBu 0.88 1.42e-05 3.00e-04
Smp_186960.1 SmLINC02038-IBu 0.83 1.00e-04 1.60e-03
Smp_191250.1 SmLINC02038-IBu 0.82 1.00e-04 1.90e-03
Smp_192890.1 SmLINC02038-IBu 0.83 9.01e-05 1.30e-03
Smp_193480.1 SmLINC02038-IBu 0.86 3.12e-05 6.00e-04
Smp_196700.1 SmLINC02038-IBu 0.85 5.86e-05 9.00e-04
Smp_198950.1 SmLINC02038-IBu 0.82 1.00e-04 1.90e-03
Smp_202590.1 SmLINC02038-IBu 0.82 1.00e-04 2.00e-03
Smp_203080.1 SmLINC02038-IBu 0.95 5.14e-08 6.50e-06
Smp_204090.1 SmLINC02038-IBu 0.80 2.00e-04 3.00e-03
Smp_205330.1 SmLINC02038-IBu 0.81 2.00e-04 2.40e-03
Smp_205480.1 SmLINC02038-IBu 0.89 5.47e-06 1.00e-04
Smp_205780.1 SmLINC02038-IBu 0.84 7.83e-05 1.10e-03
Smp_205860.1 SmLINC02038-IBu 0.83 1.00e-04 1.50e-03
Smp_212100.1 SmLINC02038-IBu 0.87 1.99e-05 4.00e-04
Smp_213890.1 SmLINC02038-IBu 0.80 2.00e-04 2.90e-03
Fig. S5 for SmLINC02038-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 SmLINC02038-IBu 0.92 1.03e-06 5.48e-05