Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02026-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:18668065-18671681 - Strand: +


Fig. 7A S3 for SmLINC02026-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33
Smp_143180.1 0 1.31 2.18 -4.27 -1.25
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
Smp_164590.1 0 -0.52 -2.00 3.18 1.87
Smp_088360.1 0 -1.38 -2.65 2.33 2.20
Smp_134570.1 0 1.52 5.26 4.16 3.39
Smp_198690.1 0 0.21 4.21 3.40 3.57
Smp_168560.1 0 1.04 -0.12 3.93 3.82
Smp_059600.1 0 -0.02 0.23 4.19 3.88
Smp_156960.2 0 0.11 1.32 6.16 4.27
Smp_152470.1 0 -1.56 1.06 4.80 4.40
Smp_154990.1 0 1.77 2.06 5.38 4.49
Smp_102210.1 0 1.41 4.53 8.07 8.61
Smp_123010.1 0 0.82 4.34 7.81 8.93
Smp_141680.1 0 1.93 6.74 10.30 9.72

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_059600.1 SmLINC02026-IBu -0.59 1.88e-02 5.49e-02
Smp_088360.1 SmLINC02026-IBu -0.70 3.50e-03 1.61e-02
Smp_102210.1 SmLINC02026-IBu -0.59 1.89e-02 5.51e-02
Smp_123010.1 SmLINC02026-IBu -0.55 3.24e-02 8.14e-02
Smp_134570.1 SmLINC02026-IBu 0.54 3.44e-02 8.50e-02
Smp_141680.1 SmLINC02026-IBu -0.55 2.99e-02 7.69e-02
Smp_143180.1 SmLINC02026-IBu 0.58 2.21e-02 6.17e-02
Smp_152470.1 SmLINC02026-IBu -0.54 3.59e-02 8.77e-02
Smp_154990.1 SmLINC02026-IBu -0.51 4.89e-02 1.10e-01
Smp_156960.2 SmLINC02026-IBu -0.52 4.40e-02 1.02e-01
Smp_164590.1 SmLINC02026-IBu -0.54 3.60e-02 8.78e-02
Smp_168560.1 SmLINC02026-IBu -0.65 8.00e-03 2.96e-02
Smp_197150.1 SmLINC02026-IBu 0.61 1.48e-02 4.61e-02
Smp_198690.1 SmLINC02026-IBu 0.61 1.40e-02 4.44e-02
Fig. 6A for SmLINC02026-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_105420.2 0 0.72 -0.11 -12.04 -12.04
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
Smp_120330.1 0 -0.78 -1.75 -6.70 -8.97
Smp_205050.1 0 0.07 1.73 -5.83 -8.52
Smp_106750.1 0 0.07 1.73 -5.83 -8.52
Smp_112930.1 0 1.35 2.48 -6.71 -8.42
Smp_042590.2 0 -1.65 -1.31 -11.45 -8.14
Smp_141800.1 0 -3.07 0.09 -3.82 -7.51
Smp_110280.1 0 -0.83 -0.25 -7.88 -7.44
Smp_162850.1 0 -0.18 -0.96 -6.10 -7.13
Smp_200840.1 0 0.23 -0.00 -8.20 -7.06
Smp_032580.1 0 -0.52 -0.98 -8.52 -6.88
Smp_078010.1 0 -2.61 3.58 -0.01 -6.74
Smp_017020.1 0 0.08 0.95 -6.58 -6.58
Smp_038560.3 0 -0.33 -1.17 -6.92 -6.48
Smp_126180.3 0 -0.43 3.15 -0.86 -6.29
Smp_181330.1 0 -0.70 -0.19 -8.45 -6.28
Smp_166530.1 0 0.50 3.97 -5.99 -5.99
Smp_180640.1 0 -1.02 0.50 -3.82 -5.77
Smp_200830.1 0 0.51 2.30 -3.02 -5.44
Smp_180050.1 0 1.06 0.86 -2.29 -5.29
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_069160.2 0 -0.02 1.03 -5.33 -4.92
Smp_055420.1 0 -4.89 5.31 -4.89 -4.89
Smp_028860.1 0 -0.07 -0.66 -4.17 -4.88
Smp_023140.1 0 -0.84 -0.87 -5.26 -4.87
Smp_084940.1 0 -2.11 1.80 -3.80 -4.78
Smp_120740.1 0 -0.36 1.05 -4.86 -4.75
Smp_097800.3 0 0.13 0.54 -4.95 -4.74
Smp_076650.1 0 0.65 2.86 -0.34 -4.53
Smp_071640.2 0 -0.94 -0.54 -4.50 -4.39
Smp_127790.1 0 -0.50 1.35 -1.97 -4.33
Smp_192030.1 0 1.02 1.31 -3.21 -4.10
Smp_035640.1 0 0.66 2.47 -3.45 -3.92
Smp_201240.1 0 0.33 1.35 -3.56 -3.77
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_152900.1 0 -0.24 0.96 -3.27 -3.63
Smp_149220.1 0 0.14 0.72 -3.31 -3.61
Smp_113620.3 0 -0.35 -0.97 -4.77 -3.55
Smp_036470.1 0 -1.93 1.42 -1.69 -3.55
Smp_158680.1 0 0.18 0.75 -3.19 -3.53
Smp_075220.3 0 -0.21 1.05 -2.86 -3.43
Smp_053830.1 0 -0.20 -1.48 -4.87 -3.36
Smp_131300.1 0 1.18 2.14 -4.87 -2.56
Smp_202420.1 0 -0.06 2.13 -4.70 -1.89
Smp_189980.1 0 1.62 9.93 -1.10 -1.10
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
Smp_206270.1 0 1.06 4.27 1.21 -0.69
Smp_048520.3 0 -2.64 4.09 0.83 -0.55
Smp_134100.1 0 0.70 4.69 0.40 -0.45
Smp_171390.1 0 1.88 5.93 0.00 0.00
Smp_159800.1 0 0.00 6.34 0.00 0.00
Smp_205590.1 0 0.00 6.18 0.00 0.00
Smp_085110.3 0 8.59 12.67 0.00 0.00
Smp_042090.3 0 0.00 11.29 0.00 0.00
Smp_035290.1 0 -2.51 -6.13 -0.77 0.19
Smp_138070.1 0 2.41 6.98 -1.44 3.23
Smp_138080.1 0 4.97 10.75 -3.79 3.75
Smp_179270.2 0 8.48 9.70 4.70 3.75

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC02026-IBu 0.86 2.65e-05 5.00e-04
Smp_017020.1 SmLINC02026-IBu 0.87 1.70e-05 3.00e-04
Smp_023140.1 SmLINC02026-IBu 0.85 3.99e-05 7.00e-04
Smp_028860.1 SmLINC02026-IBu 0.82 1.00e-04 1.80e-03
Smp_032580.1 SmLINC02026-IBu 0.83 1.00e-04 1.50e-03
Smp_035290.1 SmLINC02026-IBu -0.84 7.69e-05 1.10e-03
Smp_035640.1 SmLINC02026-IBu 0.90 4.32e-06 1.00e-04
Smp_036470.1 SmLINC02026-IBu 0.81 1.00e-04 2.20e-03
Smp_038560.3 SmLINC02026-IBu 0.86 2.68e-05 5.00e-04
Smp_042090.3 SmLINC02026-IBu 0.85 3.93e-05 7.00e-04
Smp_042590.2 SmLINC02026-IBu 0.84 6.61e-05 1.00e-03
Smp_048520.3 SmLINC02026-IBu 0.81 1.00e-04 2.20e-03
Smp_053830.1 SmLINC02026-IBu 0.89 5.92e-06 1.00e-04
Smp_055420.1 SmLINC02026-IBu 0.83 8.91e-05 1.30e-03
Smp_069160.2 SmLINC02026-IBu 0.88 1.15e-05 2.00e-04
Smp_071640.2 SmLINC02026-IBu 0.82 1.00e-04 1.80e-03
Smp_075220.3 SmLINC02026-IBu 0.95 2.12e-08 3.55e-06
Smp_076650.1 SmLINC02026-IBu 0.87 1.60e-05 3.00e-04
Smp_078010.1 SmLINC02026-IBu 0.84 7.73e-05 1.10e-03
Smp_084940.1 SmLINC02026-IBu 0.84 6.10e-05 9.00e-04
Smp_085110.3 SmLINC02026-IBu 0.80 3.00e-04 3.30e-03
Smp_090930.5 SmLINC02026-IBu 0.83 9.97e-05 1.40e-03
Smp_097800.3 SmLINC02026-IBu 0.94 9.43e-08 9.85e-06
Smp_098890.1 SmLINC02026-IBu 0.93 3.99e-07 2.69e-05
Smp_105420.2 SmLINC02026-IBu 0.87 2.12e-05 4.00e-04
Smp_106750.1 SmLINC02026-IBu 0.86 3.63e-05 6.00e-04
Smp_110280.1 SmLINC02026-IBu 0.82 1.00e-04 1.70e-03
Smp_112930.1 SmLINC02026-IBu 0.81 2.00e-04 2.40e-03
Smp_113620.3 SmLINC02026-IBu 0.81 2.00e-04 2.60e-03
Smp_120330.1 SmLINC02026-IBu 0.84 6.29e-05 1.00e-03
Smp_120740.1 SmLINC02026-IBu 0.82 1.00e-04 1.80e-03
Smp_126180.3 SmLINC02026-IBu 0.83 1.00e-04 1.40e-03
Smp_127790.1 SmLINC02026-IBu 0.84 7.78e-05 1.10e-03
Smp_131300.1 SmLINC02026-IBu 0.86 2.76e-05 5.00e-04
Smp_134100.1 SmLINC02026-IBu 0.83 1.00e-04 1.40e-03
Smp_138070.1 SmLINC02026-IBu 0.83 9.60e-05 1.30e-03
Smp_138080.1 SmLINC02026-IBu 0.84 8.50e-05 1.20e-03
Smp_141800.1 SmLINC02026-IBu 0.81 2.00e-04 2.60e-03
Smp_149220.1 SmLINC02026-IBu 0.81 2.00e-04 2.70e-03
Smp_152900.1 SmLINC02026-IBu 0.82 1.00e-04 1.80e-03
Smp_158680.1 SmLINC02026-IBu 0.80 2.00e-04 3.00e-03
Smp_159800.1 SmLINC02026-IBu 0.84 7.33e-05 1.10e-03
Smp_162850.1 SmLINC02026-IBu 0.89 6.45e-06 1.00e-04
Smp_166530.1 SmLINC02026-IBu 0.84 8.88e-05 1.20e-03
Smp_171390.1 SmLINC02026-IBu 0.80 2.00e-04 2.80e-03
Smp_179270.2 SmLINC02026-IBu 0.83 1.00e-04 1.60e-03
Smp_180050.1 SmLINC02026-IBu 0.80 2.00e-04 2.90e-03
Smp_180640.1 SmLINC02026-IBu 0.86 2.55e-05 5.00e-04
Smp_181330.1 SmLINC02026-IBu 0.84 7.25e-05 1.10e-03
Smp_184180.1 SmLINC02026-IBu 0.83 1.00e-04 1.50e-03
Smp_189980.1 SmLINC02026-IBu 0.87 2.36e-05 4.00e-04
Smp_192030.1 SmLINC02026-IBu 0.85 5.61e-05 9.00e-04
Smp_194060.1 SmLINC02026-IBu 0.95 4.36e-08 5.81e-06
Smp_200830.1 SmLINC02026-IBu 0.84 6.63e-05 1.00e-03
Smp_200840.1 SmLINC02026-IBu 0.92 1.12e-06 5.56e-05
Smp_201240.1 SmLINC02026-IBu 0.81 2.00e-04 2.50e-03
Smp_202420.1 SmLINC02026-IBu 0.86 3.44e-05 6.00e-04
Smp_205050.1 SmLINC02026-IBu 0.86 3.63e-05 6.00e-04
Smp_205590.1 SmLINC02026-IBu 0.84 8.43e-05 1.20e-03
Smp_206270.1 SmLINC02026-IBu 0.81 2.00e-04 2.50e-03
Fig. S5 for SmLINC02026-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_194060.1 0 0.19 1.68 -10.58 -10.66
Smp_098890.1 0 -0.06 -0.10 -10.16 -9.46
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_098890.1 SmLINC02026-IBu 0.93 3.99e-07 2.81e-05
Smp_194060.1 SmLINC02026-IBu 0.95 4.36e-08 6.15e-06