Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC02005-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:18667194-18667821 - Strand: +


Fig. S5 for SmLINC02005-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_128510.1 0 3.20 1.49 10.55 5.33
SmLINC02005-IBu 0 0.60 3.27 6.38 5.34
Smp_017610.1 0 -3.10 2.10 11.36 6.75
Smp_160360.1 0 0.49 1.23 10.10 7.29
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_125200.1 0 0.00 7.38 10.66 9.27
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_129110.1 0 7.10 10.62 11.56 10.18
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 SmLINC02005-IBu 0.91 2.01e-06 8.75e-05
Smp_017610.1 SmLINC02005-IBu 0.91 1.52e-06 7.18e-05
Smp_045200.1 SmLINC02005-IBu 0.94 1.05e-07 1.12e-05
Smp_068270.1 SmLINC02005-IBu 0.92 5.84e-07 3.66e-05
Smp_082580.1 SmLINC02005-IBu 0.90 2.61e-06 1.00e-04
Smp_084270.1 SmLINC02005-IBu 0.94 1.29e-07 1.28e-05
Smp_105730.1 SmLINC02005-IBu 0.90 4.13e-06 1.00e-04
Smp_118560.1 SmLINC02005-IBu 0.94 8.75e-08 9.87e-06
Smp_125200.1 SmLINC02005-IBu 0.95 4.26e-08 6.06e-06
Smp_125210.1 SmLINC02005-IBu 0.94 1.22e-07 1.24e-05
Smp_128510.1 SmLINC02005-IBu 0.91 2.10e-06 9.01e-05
Smp_129110.1 SmLINC02005-IBu 0.92 1.10e-06 5.73e-05
Smp_134960.1 SmLINC02005-IBu 0.93 2.20e-07 1.86e-05
Smp_141680.1 SmLINC02005-IBu 0.92 8.27e-07 4.67e-05
Smp_160360.1 SmLINC02005-IBu 0.91 1.25e-06 6.27e-05
Smp_163940.1 SmLINC02005-IBu 0.93 2.79e-07 2.19e-05
Smp_164550.1 SmLINC02005-IBu 0.92 9.23e-07 5.04e-05
Smp_170280.1 SmLINC02005-IBu 0.95 5.42e-08 7.13e-06
Smp_175020.1 SmLINC02005-IBu 0.94 8.15e-08 9.41e-06
Smp_194960.1 SmLINC02005-IBu 0.91 1.50e-06 7.12e-05
Smp_194970.1 SmLINC02005-IBu 0.91 1.37e-06 6.66e-05
Smp_194980.1 SmLINC02005-IBu 0.92 9.28e-07 5.06e-05
Smp_197400.1 SmLINC02005-IBu 0.90 3.25e-06 1.00e-04
Smp_200750.1 SmLINC02005-IBu 0.95 2.34e-08 4.03e-06