Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01979-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:18571709-18576244 - Strand: +


Fig. 7A S3 for SmLINC01979-IBu with r ≥ 0.5 or r ≤ -0.5..

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
Smp_123000.2 0 1.85 1.78 -1.88 -2.33
Smp_123010.1 0 0.82 4.34 7.81 8.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_123000.2 SmLINC01979-IBu 0.91 1.55e-06 5.01e-05
Smp_123010.1 SmLINC01979-IBu -0.56 2.65e-02 7.04e-02
Fig. 6A for SmLINC01979-IBu with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_077880.1 0 -0.58 -1.01 -13.13 -13.13
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_176230.2 0 0.48 -0.91 -5.65 -11.30
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
Smp_024140.1 0 0.15 -0.05 -5.68 -10.99
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_194150.1 0 0.10 -0.41 -9.52 -9.52
Smp_179670.1 0 1.45 -1.30 -8.21 -9.30
Smp_161230.1 0 0.25 -1.38 -5.05 -7.28
Smp_146920.1 0 0.99 1.37 -7.20 -7.20
Smp_123250.1 0 1.32 -1.61 -6.54 -6.89
Smp_128400.1 0 -0.10 -1.06 -4.61 -6.71
Smp_193650.1 0 2.01 1.40 -6.66 -6.66
Smp_032750.1 0 0.69 0.55 -6.01 -6.60
Smp_059210.7 0 0.04 -0.34 -3.63 -6.60
Smp_022320.1 0 0.31 -0.15 -2.49 -6.20
Smp_136840.1 0 1.29 1.39 -6.10 -6.10
Smp_012010.1 0 0.26 0.29 -5.48 -5.97
Smp_169500.1 0 1.36 1.90 -2.93 -5.45
Smp_034980.1 0 0.00 -0.47 -4.42 -5.42
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
Smp_014400.1 0 -0.14 -0.99 -4.80 -5.29
Smp_133830.1 0 0.07 -2.63 -3.15 -5.03
Smp_203990.1 0 0.81 0.18 -4.26 -4.99
Smp_092780.1 0 -0.13 -0.30 -4.81 -4.98
Smp_126560.1 0 1.05 1.45 -4.09 -4.98
Smp_161280.1 0 1.17 1.48 -9.00 -4.95
Smp_093740.2 0 1.50 0.51 -2.09 -4.86
Smp_202990.1 0 3.06 1.30 -2.66 -4.70
Smp_037610.1 0 1.63 1.24 -3.86 -4.68
Smp_203400.1 0 1.56 0.55 -7.76 -4.64
Smp_038980.2 0 0.92 -0.55 -2.44 -4.61
Smp_021870.1 0 -0.42 -1.33 -4.52 -4.56
Smp_034840.2 0 -0.14 -0.56 -4.27 -4.43
Smp_129780.1 0 0.66 -0.31 -3.14 -4.36
Smp_197150.1 0 -0.08 0.36 -3.43 -4.33
Smp_204820.1 0 1.32 1.25 -3.19 -4.27
Smp_157750.1 0 0.25 -0.37 -3.45 -4.12
Smp_005080.1 0 0.96 -0.03 -3.26 -4.08
Smp_203820.1 0 3.17 -0.24 -1.93 -3.97
Smp_202030.1 0 2.08 0.51 -3.93 -3.93
Smp_172460.1 0 0.84 -1.54 -4.74 -3.90
Smp_017080.1 0 0.12 -0.36 -3.91 -3.88
Smp_159350.1 0 0.30 -0.77 -3.51 -3.83
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79
Smp_212350.1 0 1.51 0.94 -3.08 -3.78
Smp_142980.1 0 0.95 0.31 -2.54 -3.71
Smp_142460.1 0 1.61 0.48 -3.34 -3.60
Smp_205030.1 0 0.40 -0.18 -3.74 -3.55
Smp_075640.2 0 2.99 2.20 -1.24 -3.44
Smp_164270.1 0 1.19 0.27 -2.73 -3.35
Smp_077860.1 0 1.35 0.90 -2.31 -3.33
Smp_079260.1 0 1.54 2.23 -2.79 -3.15
Smp_171610.1 0 0.35 -0.62 -4.59 -3.11
Smp_138890.1 0 2.00 0.89 -2.07 -3.06
Smp_084210.1 0 0.94 -0.62 -4.01 -2.94
Smp_204830.1 0 1.96 1.08 -3.62 -2.92
Smp_187410.1 0 1.21 -3.66 -1.99 -2.90
Smp_157840.1 0 1.84 2.05 -4.37 -2.80
Smp_138140.1 0 2.02 2.69 -3.31 -2.76
Smp_171540.2 0 1.44 -2.06 -3.96 -2.73
Smp_206300.1 0 2.22 0.64 -3.00 -2.69
Smp_140130.1 0 1.66 2.18 -1.05 -2.58
Smp_201230.1 0 1.72 -0.34 -3.72 -2.51
Smp_123000.2 0 1.85 1.78 -1.88 -2.33
Smp_032280.1 0 2.61 1.80 -2.26 -2.27
Smp_205220.1 0 2.68 1.94 -1.09 -2.07
Smp_202230.1 0 5.69 2.03 -1.93 -1.93
Smp_164180.1 0 3.02 1.05 -0.21 -1.81
Smp_157270.1 0 3.45 4.02 -0.36 -1.80
Smp_142120.1 0 2.79 0.55 -2.29 -1.47
Smp_046690.1 0 2.98 1.68 -1.29 -1.41
Smp_200600.1 0 3.98 2.91 -2.23 -1.39
Smp_024360.2 0 3.66 2.97 0.48 -1.11
Smp_152170.1 0 2.88 3.15 -0.68 -0.83
Smp_076560.2 0 1.37 1.23 -7.29 -0.73
Smp_011660.3 0 3.68 4.23 1.47 0.71
Smp_068270.3 0 4.48 4.31 -7.70 1.13
Smp_202840.1 0 4.66 1.62 -3.75 1.23
Smp_152770.1 0 4.62 0.47 2.45 1.74
Smp_140390.1 0 12.76 10.19 10.82 11.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005080.1 SmLINC01979-IBu 0.82 1.00e-04 1.70e-03
Smp_011660.3 SmLINC01979-IBu 0.81 2.00e-04 2.40e-03
Smp_012010.1 SmLINC01979-IBu 0.84 8.23e-05 1.20e-03
Smp_014400.1 SmLINC01979-IBu 0.80 2.00e-04 3.00e-03
Smp_017080.1 SmLINC01979-IBu 0.86 3.05e-05 5.00e-04
Smp_021870.1 SmLINC01979-IBu 0.81 2.00e-04 2.60e-03
Smp_022320.1 SmLINC01979-IBu 0.85 5.77e-05 9.00e-04
Smp_024140.1 SmLINC01979-IBu 0.87 1.85e-05 4.00e-04
Smp_024360.2 SmLINC01979-IBu 0.85 4.70e-05 8.00e-04
Smp_032280.1 SmLINC01979-IBu 0.94 9.66e-08 1.00e-05
Smp_032750.1 SmLINC01979-IBu 0.88 1.09e-05 2.00e-04
Smp_034840.2 SmLINC01979-IBu 0.84 6.12e-05 9.00e-04
Smp_034980.1 SmLINC01979-IBu 0.83 1.00e-04 1.40e-03
Smp_037610.1 SmLINC01979-IBu 0.94 1.42e-07 1.31e-05
Smp_038980.2 SmLINC01979-IBu 0.95 3.37e-08 4.87e-06
Smp_046690.1 SmLINC01979-IBu 0.91 1.88e-06 8.04e-05
Smp_059210.7 SmLINC01979-IBu 0.83 1.00e-04 1.50e-03
Smp_059340.3 SmLINC01979-IBu 0.80 2.00e-04 2.90e-03
Smp_068270.3 SmLINC01979-IBu 0.92 9.61e-07 4.98e-05
Smp_075640.2 SmLINC01979-IBu 0.92 7.07e-07 4.01e-05
Smp_076560.2 SmLINC01979-IBu 0.87 1.71e-05 3.00e-04
Smp_077860.1 SmLINC01979-IBu 0.83 1.00e-04 1.50e-03
Smp_077880.1 SmLINC01979-IBu 0.83 1.00e-04 1.40e-03
Smp_079260.1 SmLINC01979-IBu 0.80 2.00e-04 2.70e-03
Smp_084210.1 SmLINC01979-IBu 0.93 2.61e-07 1.99e-05
Smp_092780.1 SmLINC01979-IBu 0.80 2.00e-04 2.80e-03
Smp_093740.2 SmLINC01979-IBu 0.82 1.00e-04 1.70e-03
Smp_123000.2 SmLINC01979-IBu 0.91 1.55e-06 7.03e-05
Smp_123250.1 SmLINC01979-IBu 0.88 9.93e-06 2.00e-04
Smp_126560.1 SmLINC01979-IBu 0.85 4.61e-05 8.00e-04
Smp_128400.1 SmLINC01979-IBu 0.93 3.67e-07 2.53e-05
Smp_129780.1 SmLINC01979-IBu 0.87 1.75e-05 3.00e-04
Smp_133830.1 SmLINC01979-IBu 0.84 6.19e-05 9.00e-04
Smp_136840.1 SmLINC01979-IBu 0.92 1.16e-06 5.73e-05
Smp_138140.1 SmLINC01979-IBu 0.81 2.00e-04 2.70e-03
Smp_138890.1 SmLINC01979-IBu 0.92 1.18e-06 5.79e-05
Smp_140130.1 SmLINC01979-IBu 0.81 1.00e-04 2.20e-03
Smp_140390.1 SmLINC01979-IBu 0.80 3.00e-04 3.20e-03
Smp_142120.1 SmLINC01979-IBu 0.94 1.27e-07 1.21e-05
Smp_142460.1 SmLINC01979-IBu 0.95 2.92e-08 4.42e-06
Smp_142980.1 SmLINC01979-IBu 0.80 2.00e-04 2.90e-03
Smp_146920.1 SmLINC01979-IBu 0.82 1.00e-04 1.70e-03
Smp_152170.1 SmLINC01979-IBu 0.89 7.80e-06 2.00e-04
Smp_152770.1 SmLINC01979-IBu 0.83 1.00e-04 1.60e-03
Smp_157270.1 SmLINC01979-IBu 0.81 2.00e-04 2.50e-03
Smp_157750.1 SmLINC01979-IBu 0.82 1.00e-04 2.00e-03
Smp_157840.1 SmLINC01979-IBu 0.87 1.57e-05 3.00e-04
Smp_159350.1 SmLINC01979-IBu 0.81 1.00e-04 2.20e-03
Smp_161230.1 SmLINC01979-IBu 0.83 1.00e-04 1.40e-03
Smp_161280.1 SmLINC01979-IBu 0.80 2.00e-04 2.90e-03
Smp_164180.1 SmLINC01979-IBu 0.93 5.08e-07 3.18e-05
Smp_164270.1 SmLINC01979-IBu 0.81 1.00e-04 2.20e-03
Smp_168800.1 SmLINC01979-IBu 0.80 2.00e-04 2.70e-03
Smp_169500.1 SmLINC01979-IBu 0.82 1.00e-04 1.70e-03
Smp_171540.2 SmLINC01979-IBu 0.85 5.93e-05 9.00e-04
Smp_171610.1 SmLINC01979-IBu 0.80 3.00e-04 3.20e-03
Smp_172460.1 SmLINC01979-IBu 0.89 5.46e-06 1.00e-04
Smp_176230.2 SmLINC01979-IBu 0.81 2.00e-04 2.50e-03
Smp_179670.1 SmLINC01979-IBu 0.89 5.93e-06 1.00e-04
Smp_187410.1 SmLINC01979-IBu 0.84 8.30e-05 1.20e-03
Smp_190900.1 SmLINC01979-IBu 0.88 1.48e-05 3.00e-04
Smp_193650.1 SmLINC01979-IBu 0.97 3.15e-10 2.24e-07
Smp_193700.1 SmLINC01979-IBu 0.92 5.87e-07 3.52e-05
Smp_193990.1 SmLINC01979-IBu 0.94 1.44e-07 1.32e-05
Smp_194150.1 SmLINC01979-IBu 0.90 2.72e-06 1.00e-04
Smp_197150.1 SmLINC01979-IBu 0.80 2.00e-04 3.00e-03
Smp_200600.1 SmLINC01979-IBu 0.90 3.88e-06 1.00e-04
Smp_201230.1 SmLINC01979-IBu 0.85 5.16e-05 8.00e-04
Smp_202030.1 SmLINC01979-IBu 0.84 7.60e-05 1.10e-03
Smp_202230.1 SmLINC01979-IBu 0.84 6.35e-05 1.00e-03
Smp_202840.1 SmLINC01979-IBu 0.87 2.15e-05 4.00e-04
Smp_202990.1 SmLINC01979-IBu 0.92 6.99e-07 3.98e-05
Smp_203400.1 SmLINC01979-IBu 0.88 1.49e-05 3.00e-04
Smp_203820.1 SmLINC01979-IBu 0.84 6.80e-05 1.00e-03
Smp_203990.1 SmLINC01979-IBu 0.88 1.37e-05 3.00e-04
Smp_204820.1 SmLINC01979-IBu 0.91 1.55e-06 7.00e-05
Smp_204830.1 SmLINC01979-IBu 0.92 7.84e-07 4.32e-05
Smp_205030.1 SmLINC01979-IBu 0.82 1.00e-04 1.70e-03
Smp_205220.1 SmLINC01979-IBu 0.84 7.43e-05 1.10e-03
Smp_206300.1 SmLINC01979-IBu 0.91 1.77e-06 7.73e-05
Smp_212350.1 SmLINC01979-IBu 0.97 4.90e-10 2.97e-07
Fig. S5 for SmLINC01979-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_193700.1 0 2.00 0.59 -11.32 -11.32
Smp_193990.1 0 2.54 2.04 -11.18 -11.18
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_193700.1 SmLINC01979-IBu 0.92 5.87e-07 3.67e-05
Smp_193990.1 SmLINC01979-IBu 0.94 1.44e-07 1.38e-05