Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01954-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:17851387-17866709 - Strand: -


Fig. S5 for SmLINC01954-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
SmLINC01954-IBu 0 -0.14 -2.96 -4.06 -3.25

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032320.1 SmLINC01954-IBu 0.92 6.08e-07 3.76e-05
Smp_036270.4 SmLINC01954-IBu 0.90 2.87e-06 1.00e-04
Smp_112090.1 SmLINC01954-IBu 0.96 8.15e-09 1.99e-06