Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01925-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:15516203-15518654 - Strand: -


Fig. S5 for SmLINC01925-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC01925-IBu 0 0.00 0.00 8.15 8.98
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015850.2 SmLINC01925-IBu -0.90 2.80e-06 1.00e-04
Smp_033260.1 SmLINC01925-IBu 0.97 9.01e-10 4.76e-07
Smp_038870.2 SmLINC01925-IBu 0.93 2.60e-07 2.08e-05
Smp_040970.2 SmLINC01925-IBu 0.91 1.32e-06 6.49e-05
Smp_050350.3 SmLINC01925-IBu 0.96 4.41e-09 1.33e-06
Smp_052280.2 SmLINC01925-IBu 0.94 1.36e-07 1.33e-05
Smp_056460.1 SmLINC01925-IBu 0.98 2.53e-12 1.17e-08
Smp_058660.1 SmLINC01925-IBu 0.91 1.62e-06 7.51e-05
Smp_079420.1 SmLINC01925-IBu 0.95 4.07e-08 5.88e-06
Smp_094050.1 SmLINC01925-IBu 0.93 3.48e-07 2.55e-05
Smp_095410.1 SmLINC01925-IBu 0.98 1.13e-10 1.26e-07
Smp_137000.2 SmLINC01925-IBu 0.95 5.18e-08 6.92e-06
Smp_137810.1 SmLINC01925-IBu 0.92 6.83e-07 4.08e-05
Smp_140720.1 SmLINC01925-IBu 0.92 7.71e-07 4.44e-05
Smp_145400.1 SmLINC01925-IBu 0.93 2.05e-07 1.77e-05
Smp_151120.1 SmLINC01925-IBu 0.91 2.49e-06 1.00e-04
Smp_155570.1 SmLINC01925-IBu 0.92 7.02e-07 4.16e-05
Smp_156930.1 SmLINC01925-IBu 0.93 4.62e-07 3.11e-05
Smp_169670.1 SmLINC01925-IBu 0.92 8.93e-07 4.92e-05
Smp_172960.1 SmLINC01925-IBu 0.96 7.99e-09 1.96e-06
Smp_192780.1 SmLINC01925-IBu 0.98 3.07e-11 5.56e-08
Smp_194860.1 SmLINC01925-IBu 0.96 4.09e-09 1.26e-06
Smp_196830.1 SmLINC01925-IBu 0.90 4.84e-06 1.00e-04
Smp_202610.1 SmLINC01925-IBu 0.90 4.64e-06 1.00e-04
Smp_203090.1 SmLINC01925-IBu 0.93 4.92e-07 3.25e-05
Smp_212510.1 SmLINC01925-IBu -0.90 4.64e-06 1.00e-04