Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01844-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:12426863-12436910 - Strand: +


Fig. S5 for SmLINC01844-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01844-IBu 0 0.00 6.58 8.68 8.73
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031040.1 SmLINC01844-IBu 0.91 1.42e-06 6.83e-05
Smp_040970.2 SmLINC01844-IBu 0.90 4.79e-06 1.00e-04
Smp_045200.1 SmLINC01844-IBu 0.92 1.16e-06 5.92e-05
Smp_051210.3 SmLINC01844-IBu 0.94 8.56e-08 9.73e-06
Smp_055340.2 SmLINC01844-IBu 0.91 1.44e-06 6.91e-05
Smp_058660.1 SmLINC01844-IBu 0.92 6.20e-07 3.82e-05
Smp_068270.1 SmLINC01844-IBu 0.90 4.16e-06 1.00e-04
Smp_137000.2 SmLINC01844-IBu 0.90 3.57e-06 1.00e-04
Smp_141680.1 SmLINC01844-IBu 0.92 6.15e-07 3.79e-05
Smp_145400.1 SmLINC01844-IBu 0.94 1.59e-07 1.48e-05
Smp_150980.2 SmLINC01844-IBu 0.93 3.70e-07 2.66e-05
Smp_151120.1 SmLINC01844-IBu 0.93 2.16e-07 1.83e-05
Smp_166860.1 SmLINC01844-IBu 0.90 3.35e-06 1.00e-04
Smp_170280.1 SmLINC01844-IBu 0.90 4.16e-06 1.00e-04
Smp_172480.1 SmLINC01844-IBu 0.94 1.89e-07 1.68e-05
Smp_172960.1 SmLINC01844-IBu 0.94 1.00e-07 1.08e-05
Smp_194860.1 SmLINC01844-IBu 0.92 9.90e-07 5.30e-05
Smp_203090.1 SmLINC01844-IBu 0.94 9.37e-08 1.03e-05
Smp_205270.1 SmLINC01844-IBu 0.92 6.27e-07 3.84e-05