Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01840-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:12186533-12191253 - Strand: -


Fig. S5 for SmLINC01840-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC01840-IBu 0 0.65 0.48 4.64 5.78
Smp_194380.1 0 2.98 2.11 7.89 10.14
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_163700.1 0 -1.15 0.72 8.02 10.29
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_123880.1 0 1.71 4.05 9.88 12.08
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_187140.1 0 1.31 4.33 10.17 12.62
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_131410.1 0 3.39 4.65 11.85 14.02
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_007950.1 0 5.54 7.26 12.66 14.89
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC01840-IBu 0.92 9.20e-07 5.03e-05
Smp_016490.2 SmLINC01840-IBu 0.90 3.17e-06 1.00e-04
Smp_028870.1 SmLINC01840-IBu 0.91 2.43e-06 9.98e-05
Smp_033260.1 SmLINC01840-IBu 0.94 1.61e-07 1.50e-05
Smp_037720.1 SmLINC01840-IBu 0.94 1.51e-07 1.43e-05
Smp_038870.2 SmLINC01840-IBu 0.90 2.83e-06 1.00e-04
Smp_050350.3 SmLINC01840-IBu 0.94 6.90e-08 8.40e-06
Smp_052280.2 SmLINC01840-IBu 0.92 1.11e-06 5.77e-05
Smp_056460.1 SmLINC01840-IBu 0.97 4.82e-10 3.19e-07
Smp_079420.1 SmLINC01840-IBu 0.91 2.09e-06 8.99e-05
Smp_083430.1 SmLINC01840-IBu 0.95 2.41e-08 4.12e-06
Smp_094050.1 SmLINC01840-IBu 0.90 4.37e-06 1.00e-04
Smp_095410.1 SmLINC01840-IBu 0.95 2.81e-08 4.56e-06
Smp_102780.1 SmLINC01840-IBu 0.91 1.65e-06 7.61e-05
Smp_123880.1 SmLINC01840-IBu 0.92 1.06e-06 5.59e-05
Smp_131410.1 SmLINC01840-IBu 0.92 9.66e-07 5.20e-05
Smp_137810.1 SmLINC01840-IBu 0.95 2.22e-08 3.90e-06
Smp_140720.1 SmLINC01840-IBu 0.94 7.46e-08 8.86e-06
Smp_155570.1 SmLINC01840-IBu 0.95 4.13e-08 5.93e-06
Smp_163700.1 SmLINC01840-IBu 0.91 1.35e-06 6.59e-05
Smp_164320.1 SmLINC01840-IBu 0.90 2.74e-06 1.00e-04
Smp_169670.1 SmLINC01840-IBu 0.90 4.37e-06 1.00e-04
Smp_172960.1 SmLINC01840-IBu 0.90 3.85e-06 1.00e-04
Smp_187140.1 SmLINC01840-IBu 0.90 4.78e-06 1.00e-04
Smp_192780.1 SmLINC01840-IBu 0.96 1.12e-08 2.46e-06
Smp_194380.1 SmLINC01840-IBu 0.91 1.55e-06 7.28e-05
Smp_194860.1 SmLINC01840-IBu 0.92 7.95e-07 4.54e-05
Smp_196830.1 SmLINC01840-IBu 0.96 1.38e-08 2.84e-06
Smp_202610.1 SmLINC01840-IBu 0.94 1.59e-07 1.49e-05
Smp_203030.1 SmLINC01840-IBu 0.91 1.93e-06 8.49e-05