Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01833-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:11968333-11977286 - Strand: -


Fig. S5 for SmLINC01833-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_033050.2 0 0.00 -0.84 -2.77 -10.32
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC01833-IBu 0 -0.11 -1.11 -4.31 -6.80
Smp_052280.2 0 4.60 9.23 11.90 12.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033050.2 SmLINC01833-IBu 0.90 4.21e-06 1.00e-04
Smp_036270.4 SmLINC01833-IBu 0.92 9.15e-07 5.01e-05
Smp_052280.2 SmLINC01833-IBu -0.90 4.40e-06 1.00e-04
Smp_111640.1 SmLINC01833-IBu 0.90 2.76e-06 1.00e-04
Smp_160230.1 SmLINC01833-IBu 0.90 4.21e-06 1.00e-04
Smp_184710.1 SmLINC01833-IBu 0.92 7.89e-07 4.52e-05