Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01832-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:11958285-11963170 - Strand: -


Fig. S5 for SmLINC01832-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_048260.1 0 -0.22 -2.11 -11.13 -11.13
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
SmLINC01832-IBu 0 0.65 0.07 -2.99 -5.02

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_048260.1 SmLINC01832-IBu 0.90 4.78e-06 1.00e-04
Smp_086600.1 SmLINC01832-IBu 0.92 5.74e-07 3.61e-05
Smp_109340.1 SmLINC01832-IBu 0.95 1.62e-08 3.15e-06