Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01763-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:7699541-7701609 - Strand: +


Fig. S5 for SmLINC01763-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01763-IBu 0 0.00 0.00 6.62 8.02
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_007950.1 0 5.54 7.26 12.66 14.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_007950.1 SmLINC01763-IBu 0.91 2.21e-06 9.33e-05
Smp_037720.1 SmLINC01763-IBu 0.94 8.90e-08 9.99e-06
Smp_083430.1 SmLINC01763-IBu 0.92 6.41e-07 3.91e-05
Smp_137810.1 SmLINC01763-IBu 0.93 3.45e-07 2.54e-05
Smp_140720.1 SmLINC01763-IBu 0.91 1.56e-06 7.30e-05
Smp_155570.1 SmLINC01763-IBu 0.91 1.86e-06 8.29e-05
Smp_196830.1 SmLINC01763-IBu 0.95 4.40e-08 6.19e-06