Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01754-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:7312172-7316371 - Strand: -


Fig. S5 for SmLINC01754-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01754-IBu 0 2.45 3.32 7.33 8.04
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_090140.1 0 2.57 9.09 11.94 12.46
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_024180.1 SmLINC01754-IBu 0.90 3.80e-06 1.00e-04
Smp_024180.2 SmLINC01754-IBu 0.90 2.64e-06 1.00e-04
Smp_031040.1 SmLINC01754-IBu 0.90 4.64e-06 1.00e-04
Smp_033260.1 SmLINC01754-IBu 0.92 7.02e-07 4.16e-05
Smp_040970.2 SmLINC01754-IBu 0.93 1.97e-07 1.72e-05
Smp_050350.3 SmLINC01754-IBu 0.92 5.85e-07 3.66e-05
Smp_056460.1 SmLINC01754-IBu 0.91 1.89e-06 8.36e-05
Smp_079420.1 SmLINC01754-IBu 0.93 3.64e-07 2.63e-05
Smp_090140.1 SmLINC01754-IBu 0.94 7.82e-08 9.15e-06
Smp_094050.1 SmLINC01754-IBu 0.94 7.86e-08 9.18e-06
Smp_137000.2 SmLINC01754-IBu 0.90 2.94e-06 1.00e-04
Smp_194860.1 SmLINC01754-IBu 0.90 4.66e-06 1.00e-04
Smp_203090.1 SmLINC01754-IBu 0.92 1.15e-06 5.90e-05