Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01707-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:2749954-2756417 - Strand: -


Fig. S5 for SmLINC01707-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
SmLINC01707-IBu 0 -1.39 -3.43 -3.89 -3.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033000.1 SmLINC01707-IBu 0.92 8.42e-07 4.72e-05
Smp_051230.4 SmLINC01707-IBu 0.96 8.16e-09 1.99e-06
Smp_083180.1 SmLINC01707-IBu 0.95 3.89e-08 5.70e-06
Smp_106390.1 SmLINC01707-IBu 0.90 3.28e-06 1.00e-04
Smp_149670.1 SmLINC01707-IBu 0.90 4.21e-06 1.00e-04
Smp_195070.1 SmLINC01707-IBu 0.92 6.33e-07 3.87e-05