Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01706-IBu Data

Chromosome: Chr 2 - Coordinate: Chr 2:2454429-2457565 - Strand: -


Fig. S5 for SmLINC01706-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185170.1 0 0.77 -2.29 -11.66 -11.66
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
SmLINC01706-IBu 0 1.10 -1.07 -2.54 -3.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_111640.1 SmLINC01706-IBu 0.94 1.46e-07 1.40e-05
Smp_125070.1 SmLINC01706-IBu 0.92 6.06e-07 3.76e-05
Smp_182090.1 SmLINC01706-IBu 0.91 1.70e-06 7.76e-05
Smp_184710.1 SmLINC01706-IBu 0.97 5.73e-10 3.56e-07
Smp_185170.1 SmLINC01706-IBu 0.92 8.06e-07 4.58e-05
Smp_185680.1 SmLINC01706-IBu 0.95 3.18e-08 4.97e-06
Smp_185830.1 SmLINC01706-IBu 0.96 4.67e-09 1.38e-06
Smp_204360.1 SmLINC01706-IBu 0.97 1.77e-09 7.37e-07
Smp_205450.1 SmLINC01706-IBu 0.92 9.13e-07 5.00e-05