Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01675-IBu Data

Chromosome: Chr 1.unplaced.SC 0153 - Coordinate: Chr 1.unplaced.SC 0153:88013-98410 - Strand: -


Fig. S5 for SmLINC01675-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
SmLINC01675-IBu 0 -0.80 -1.29 -3.92 -5.49

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_028990.3 SmLINC01675-IBu 0.93 3.80e-07 2.71e-05
Smp_043670.2 SmLINC01675-IBu 0.91 1.82e-06 8.16e-05
Smp_096020.1 SmLINC01675-IBu 0.92 8.73e-07 4.85e-05
Smp_182890.1 SmLINC01675-IBu 0.92 1.12e-06 5.78e-05
Smp_186130.1 SmLINC01675-IBu 0.90 3.44e-06 1.00e-04
Smp_192890.1 SmLINC01675-IBu 0.90 2.81e-06 1.00e-04
Smp_205860.1 SmLINC01675-IBu 0.93 2.87e-07 2.23e-05