Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01668-IBu Data

Chromosome: Chr 1.unplaced.SC 0094 - Coordinate: Chr 1.unplaced.SC 0094:1114033-1115691 - Strand: -


Fig. S5 for SmLINC01668-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01668-IBu 0 0.00 0.00 7.88 6.50
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 SmLINC01668-IBu 0.90 3.88e-06 1.00e-04
Smp_045200.1 SmLINC01668-IBu 0.90 3.66e-06 1.00e-04
Smp_068270.1 SmLINC01668-IBu 0.94 1.83e-07 1.64e-05
Smp_082580.1 SmLINC01668-IBu 0.90 2.58e-06 1.00e-04
Smp_084270.1 SmLINC01668-IBu 0.90 3.00e-06 1.00e-04
Smp_105730.1 SmLINC01668-IBu 0.90 3.41e-06 1.00e-04
Smp_123200.1 SmLINC01668-IBu 0.92 5.23e-07 3.39e-05
Smp_131840.1 SmLINC01668-IBu 0.91 2.15e-06 9.15e-05
Smp_134960.1 SmLINC01668-IBu 0.90 3.71e-06 1.00e-04
Smp_141680.1 SmLINC01668-IBu 0.91 2.40e-06 9.90e-05
Smp_150980.2 SmLINC01668-IBu 0.90 3.58e-06 1.00e-04
Smp_154180.1 SmLINC01668-IBu 0.90 3.14e-06 1.00e-04
Smp_170280.1 SmLINC01668-IBu 0.91 2.09e-06 8.98e-05
Smp_172520.1 SmLINC01668-IBu 0.90 3.20e-06 1.00e-04
Smp_194960.1 SmLINC01668-IBu 0.92 6.61e-07 3.99e-05
Smp_194970.1 SmLINC01668-IBu 0.91 2.39e-06 9.88e-05
Smp_194980.1 SmLINC01668-IBu 0.90 3.65e-06 1.00e-04
Smp_197400.1 SmLINC01668-IBu 0.90 3.55e-06 1.00e-04