Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01595-IBu Data

Chromosome: Chr 1.unplaced.SC 0010 - Coordinate: Chr 1.unplaced.SC 0010:3797862-3802208 - Strand: -


Fig. S5 for SmLINC01595-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC01595-IBu 0 3.16 5.12 7.48 8.02
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_015850.2 SmLINC01595-IBu -0.90 3.96e-06 1.00e-04
Smp_024180.2 SmLINC01595-IBu 0.90 2.93e-06 1.00e-04
Smp_031040.1 SmLINC01595-IBu 0.90 3.86e-06 1.00e-04
Smp_033260.1 SmLINC01595-IBu 0.93 2.14e-07 1.82e-05
Smp_038870.2 SmLINC01595-IBu 0.90 3.43e-06 1.00e-04
Smp_040970.2 SmLINC01595-IBu 0.92 8.07e-07 4.58e-05
Smp_050350.3 SmLINC01595-IBu 0.93 4.23e-07 2.92e-05
Smp_051210.3 SmLINC01595-IBu 0.91 2.02e-06 8.78e-05
Smp_052280.2 SmLINC01595-IBu 0.94 1.82e-07 1.63e-05
Smp_055340.2 SmLINC01595-IBu 0.93 2.65e-07 2.11e-05
Smp_056460.1 SmLINC01595-IBu 0.91 1.68e-06 7.71e-05
Smp_058660.1 SmLINC01595-IBu 0.91 1.65e-06 7.61e-05
Smp_079420.1 SmLINC01595-IBu 0.94 1.88e-07 1.67e-05
Smp_094050.1 SmLINC01595-IBu 0.91 1.75e-06 7.93e-05
Smp_137000.2 SmLINC01595-IBu 0.93 2.46e-07 2.01e-05
Smp_137320.1 SmLINC01595-IBu 0.90 3.56e-06 1.00e-04
Smp_145400.1 SmLINC01595-IBu 0.92 1.02e-06 5.42e-05
Smp_156930.1 SmLINC01595-IBu 0.92 5.79e-07 3.64e-05
Smp_169670.1 SmLINC01595-IBu 0.93 2.05e-07 1.77e-05
Smp_172480.1 SmLINC01595-IBu 0.92 9.55e-07 5.16e-05
Smp_172960.1 SmLINC01595-IBu 0.93 3.30e-07 2.46e-05
Smp_192780.1 SmLINC01595-IBu 0.91 2.06e-06 8.89e-05
Smp_194860.1 SmLINC01595-IBu 0.94 1.56e-07 1.47e-05
Smp_203090.1 SmLINC01595-IBu 0.91 1.32e-06 6.51e-05
Smp_205270.1 SmLINC01595-IBu 0.90 4.42e-06 1.00e-04