Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01594-IBu Data

Chromosome: Chr 1.unplaced.SC 0010 - Coordinate: Chr 1.unplaced.SC 0010:3752345-3760515 - Strand: -


Fig. S5 for SmLINC01594-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_185830.1 0 1.64 -1.15 -9.24 -11.35
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_184710.1 0 0.54 -2.76 -11.35 -9.04
SmLINC01594-IBu 0 0.49 -1.93 -5.36 -3.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125070.1 SmLINC01594-IBu 0.93 2.21e-07 1.86e-05
Smp_184710.1 SmLINC01594-IBu 0.91 1.73e-06 7.88e-05
Smp_185830.1 SmLINC01594-IBu 0.91 1.88e-06 8.33e-05