Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01514-IBu Data

Chromosome: Chr 1.unplaced.SC 0010 - Coordinate: Chr 1.unplaced.SC 0010:814127-819307 - Strand: +


Fig. S5 for SmLINC01514-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_009320.1 0 -0.45 -10.12 -7.98 -10.12
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
SmLINC01514-IBu 0 0.13 -4.13 -5.01 -2.59

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009320.1 SmLINC01514-IBu 0.93 4.30e-07 2.96e-05
Smp_032320.1 SmLINC01514-IBu 0.90 3.71e-06 1.00e-04
Smp_036270.4 SmLINC01514-IBu 0.91 1.82e-06 8.15e-05
Smp_111640.1 SmLINC01514-IBu 0.91 2.25e-06 9.46e-05
Smp_112090.1 SmLINC01514-IBu 0.95 1.89e-08 3.50e-06