Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01499-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:65414589-65419960 - Strand: -


Fig. S5 for SmLINC01499-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_010140.2 0 7.72 10.83 -3.68 -3.68
Smp_138080.1 0 4.97 10.75 -3.79 3.75
SmLINC01499-IBu 0 7.87 12.99 9.91 6.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_010140.2 SmLINC01499-IBu 0.94 7.06e-08 8.53e-06
Smp_138080.1 SmLINC01499-IBu 0.94 1.06e-07 1.13e-05
Smp_159070.3 SmLINC01499-IBu 0.91 1.47e-06 7.01e-05