Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01483-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:64329686-64333409 - Strand: -


Fig. S5 for SmLINC01483-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
SmLINC01483-IBu 0 -0.00 1.60 9.89 9.85
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC01483-IBu 0.90 3.48e-06 1.00e-04
Smp_031040.1 SmLINC01483-IBu 0.90 2.79e-06 1.00e-04
Smp_031770.10 SmLINC01483-IBu 0.92 5.53e-07 3.52e-05
Smp_045200.1 SmLINC01483-IBu 0.92 5.20e-07 3.37e-05
Smp_051210.3 SmLINC01483-IBu 0.90 2.70e-06 1.00e-04
Smp_056460.1 SmLINC01483-IBu 0.92 9.33e-07 5.08e-05
Smp_058660.1 SmLINC01483-IBu 0.99 1.38e-12 8.10e-09
Smp_068270.1 SmLINC01483-IBu 0.92 6.52e-07 3.95e-05
Smp_079420.1 SmLINC01483-IBu 0.90 3.70e-06 1.00e-04
Smp_082580.1 SmLINC01483-IBu 0.92 1.10e-06 5.71e-05
Smp_095410.1 SmLINC01483-IBu 0.91 2.39e-06 9.89e-05
Smp_123200.1 SmLINC01483-IBu 0.91 1.81e-06 8.13e-05
Smp_123550.1 SmLINC01483-IBu 0.91 1.87e-06 8.29e-05
Smp_125210.1 SmLINC01483-IBu 0.91 1.92e-06 8.47e-05
Smp_134960.1 SmLINC01483-IBu 0.90 4.37e-06 1.00e-04
Smp_137000.2 SmLINC01483-IBu 0.90 3.49e-06 1.00e-04
Smp_137320.1 SmLINC01483-IBu 0.96 4.02e-09 1.25e-06
Smp_141680.1 SmLINC01483-IBu 0.96 9.47e-09 2.20e-06
Smp_145400.1 SmLINC01483-IBu 0.98 2.06e-11 4.31e-08
Smp_150980.2 SmLINC01483-IBu 0.92 1.07e-06 5.60e-05
Smp_151120.1 SmLINC01483-IBu 0.98 7.38e-11 9.63e-08
Smp_159070.2 SmLINC01483-IBu 0.90 4.40e-06 1.00e-04
Smp_166860.1 SmLINC01483-IBu 0.90 4.55e-06 1.00e-04
Smp_170280.1 SmLINC01483-IBu 0.95 2.97e-08 4.74e-06
Smp_172480.1 SmLINC01483-IBu 0.95 3.98e-08 5.79e-06
Smp_172960.1 SmLINC01483-IBu 0.97 4.68e-10 3.13e-07
Smp_194860.1 SmLINC01483-IBu 0.95 4.75e-08 6.52e-06
Smp_194960.1 SmLINC01483-IBu 0.90 2.84e-06 1.00e-04
Smp_200750.1 SmLINC01483-IBu 0.90 4.09e-06 1.00e-04
Smp_203090.1 SmLINC01483-IBu 0.93 4.08e-07 2.85e-05
Smp_205270.1 SmLINC01483-IBu 0.96 1.02e-08 2.31e-06