Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01461-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:61775598-61777427 - Strand: +


Fig. S5 for SmLINC01461-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
SmLINC01461-IBu 0 -0.51 -1.70 3.51 4.54
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_203030.1 0 2.55 0.41 8.36 10.39
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_196830.1 0 -0.76 0.59 8.97 10.89
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_037720.1 0 2.04 2.35 9.15 11.20
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_083430.1 0 4.18 6.49 11.73 13.40
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_172960.1 0 3.27 6.54 14.72 15.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 SmLINC01461-IBu 0.92 8.49e-07 4.75e-05
Smp_015850.2 SmLINC01461-IBu -0.90 3.89e-06 1.00e-04
Smp_016490.2 SmLINC01461-IBu 0.91 1.82e-06 8.14e-05
Smp_024180.1 SmLINC01461-IBu 0.92 7.02e-07 4.16e-05
Smp_024180.2 SmLINC01461-IBu 0.95 4.23e-08 6.03e-06
Smp_028870.1 SmLINC01461-IBu 0.91 1.59e-06 7.42e-05
Smp_033260.1 SmLINC01461-IBu 0.98 4.77e-12 1.75e-08
Smp_037720.1 SmLINC01461-IBu 0.90 3.87e-06 1.00e-04
Smp_038870.2 SmLINC01461-IBu 0.94 8.66e-08 9.81e-06
Smp_040970.2 SmLINC01461-IBu 0.93 3.75e-07 2.69e-05
Smp_050350.3 SmLINC01461-IBu 0.99 7.83e-13 5.69e-09
Smp_052280.2 SmLINC01461-IBu 0.96 1.19e-08 2.57e-06
Smp_056460.1 SmLINC01461-IBu 0.97 2.18e-10 1.92e-07
Smp_079420.1 SmLINC01461-IBu 0.96 9.59e-09 2.21e-06
Smp_083430.1 SmLINC01461-IBu 0.90 4.86e-06 1.00e-04
Smp_094050.1 SmLINC01461-IBu 0.97 6.56e-10 3.88e-07
Smp_095410.1 SmLINC01461-IBu 0.95 5.95e-08 7.59e-06
Smp_102780.1 SmLINC01461-IBu 0.91 1.82e-06 8.14e-05
Smp_130100.1 SmLINC01461-IBu 0.90 2.94e-06 1.00e-04
Smp_131490.1 SmLINC01461-IBu 0.90 4.27e-06 1.00e-04
Smp_137000.2 SmLINC01461-IBu 0.95 4.52e-08 6.30e-06
Smp_137810.1 SmLINC01461-IBu 0.93 3.24e-07 2.43e-05
Smp_140720.1 SmLINC01461-IBu 0.95 3.67e-08 5.47e-06
Smp_155570.1 SmLINC01461-IBu 0.95 3.25e-08 5.05e-06
Smp_156930.1 SmLINC01461-IBu 0.94 1.32e-07 1.31e-05
Smp_169670.1 SmLINC01461-IBu 0.91 1.34e-06 6.58e-05
Smp_172960.1 SmLINC01461-IBu 0.92 6.60e-07 3.99e-05
Smp_192780.1 SmLINC01461-IBu 0.98 1.35e-10 1.41e-07
Smp_194860.1 SmLINC01461-IBu 0.95 5.99e-08 7.63e-06
Smp_196830.1 SmLINC01461-IBu 0.90 3.91e-06 1.00e-04
Smp_201910.1 SmLINC01461-IBu 0.92 1.13e-06 5.82e-05
Smp_202610.1 SmLINC01461-IBu 0.93 2.33e-07 1.93e-05
Smp_203030.1 SmLINC01461-IBu 0.93 3.42e-07 2.52e-05
Smp_203090.1 SmLINC01461-IBu 0.92 9.29e-07 5.06e-05
Smp_212510.1 SmLINC01461-IBu -0.90 4.66e-06 1.00e-04