Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


SmLINC01404-IBu Data

Chromosome: Chr 1 - Coordinate: Chr 1:57751574-57753269 - Strand: -


Fig. S5 for SmLINC01404-IBu with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC01404-IBu 0 2.90 1.94 5.92 5.78
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_200750.1 0 1.72 7.25 10.11 8.83
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_170280.1 0 2.81 5.87 10.21 9.37
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_164550.1 0 5.78 6.30 11.08 9.99
Smp_031770.10 0 0.00 0.00 10.09 10.31
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_125210.1 0 5.44 5.31 11.82 10.51
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_034980.2 0 8.75 0.00 11.30 11.03
Smp_068270.1 0 0.21 0.34 12.30 11.22
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_020760.2 0 9.23 8.40 12.26 12.26
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_150980.2 0 7.91 9.49 12.91 12.48
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_083990.2 0 9.99 8.37 12.41 12.60
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_194960.1 0 0.00 0.00 17.20 15.87

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_020760.2 SmLINC01404-IBu 0.96 4.04e-09 1.25e-06
Smp_031040.1 SmLINC01404-IBu 0.90 3.58e-06 1.00e-04
Smp_031770.10 SmLINC01404-IBu 0.93 3.06e-07 2.34e-05
Smp_034980.2 SmLINC01404-IBu 0.91 2.02e-06 8.77e-05
Smp_045200.1 SmLINC01404-IBu 0.92 6.80e-07 4.07e-05
Smp_055340.2 SmLINC01404-IBu 0.90 2.86e-06 1.00e-04
Smp_058660.1 SmLINC01404-IBu 0.96 7.06e-09 1.81e-06
Smp_068270.1 SmLINC01404-IBu 0.93 3.18e-07 2.40e-05
Smp_082580.1 SmLINC01404-IBu 0.91 1.94e-06 8.52e-05
Smp_083990.2 SmLINC01404-IBu 0.91 1.30e-06 6.45e-05
Smp_084270.1 SmLINC01404-IBu 0.90 3.13e-06 1.00e-04
Smp_125210.1 SmLINC01404-IBu 0.93 3.25e-07 2.44e-05
Smp_134960.1 SmLINC01404-IBu 0.90 3.45e-06 1.00e-04
Smp_137320.1 SmLINC01404-IBu 0.94 7.25e-08 8.69e-06
Smp_141680.1 SmLINC01404-IBu 0.93 2.82e-07 2.21e-05
Smp_145400.1 SmLINC01404-IBu 0.96 5.23e-09 1.48e-06
Smp_150980.2 SmLINC01404-IBu 0.91 1.68e-06 7.69e-05
Smp_151120.1 SmLINC01404-IBu 0.93 2.01e-07 1.75e-05
Smp_164550.1 SmLINC01404-IBu 0.91 1.85e-06 8.23e-05
Smp_170280.1 SmLINC01404-IBu 0.95 2.32e-08 4.01e-06
Smp_172480.1 SmLINC01404-IBu 0.93 2.48e-07 2.02e-05
Smp_172960.1 SmLINC01404-IBu 0.92 5.89e-07 3.68e-05
Smp_194860.1 SmLINC01404-IBu 0.90 4.65e-06 1.00e-04
Smp_194960.1 SmLINC01404-IBu 0.90 3.71e-06 1.00e-04
Smp_200750.1 SmLINC01404-IBu 0.91 1.30e-06 6.42e-05
Smp_205270.1 SmLINC01404-IBu 0.94 1.43e-07 1.38e-05